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dbVar

Database of genomic structural variation

nsv6133257

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:630,002

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1749 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):14,176,143-14,806,144

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6133257	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	14,176,143	14,806,144
nsv6133257	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187607.1	Chr16\|NT_1 87607.1	1	565,201
nsv6133257	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	14,270,000	14,900,001

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17678077	copy number loss	SAMN20524662	Sequencing	Paired-end mapping	1,603

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17678077	Remapped	Pass	NT_187607.1:g.1_56 5201del	GRCh38.p12	Second Pass	NT_187607.1	Chr16\|NT_1 87607.1	1	565,201
nssv17678077	Remapped	Perfect	NC_000016.10:g.141 76143_14806144del	GRCh38.p12	First Pass	NC_000016.10	Chr16	14,176,143	14,806,144
nssv17678077	Submitted genomic		NC_000016.9:g.1427 0000_14900001del	GRCh37 (hg19)		NC_000016.9	Chr16	14,270,000	14,900,001

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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