nsv6314491
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:complex chromosomal rearrangement
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1
- Description:46;X;idic(Y)(q11);t(2;6;12;3)(q24;q23;q12;p13)
[21]/46;XY;t(2;6;12;3)dn AND multiple conditions - Publication(s):Mintz et al. 2021, Redin et al. 2016
- ClinVar: RCV000258704.2
- ClinVar: VCV000268021.1
- HP: 0000252
- HP: 0000708
- HP: 0000718
- HP: 0001250
- HP: 0001252
- HP: 0001344
- HP: 0001762
- HP: 0004322
- HP: 0006895
- HP: 0011344
- MONDO: 0001149
- MONDO: 0007342
- MedGen: C0001807
- MedGen: C0009081
- MedGen: C0026827
- MedGen: C0036572
- MedGen: C0233514
- MedGen: C0349588
- MedGen: C1837397
- MedGen: C1845245
- MedGen: C1854882
- MedGen: C4551563
- OMIM: 119800
- OMIM: 602149.0001
- OMIM: 602149.0002
- Orphanet: 199315
- PubMed: 27841880
- PubMed: 33514815
- Overlapping Genes
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 99 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 99 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 102 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 102 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 100 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 100 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 128 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 128 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 87 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 87 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 79 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 79 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 81 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 81 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 70 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 70 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 62 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 62 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 116 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 116 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 6 SVs from 6 studies. See in: genome view
Overlapping variant regions from other studies: 6 SVs from 6 studies. See in: genome view
Overlapping variant regions from other studies: 99 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 99 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 103 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 102 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 102 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 100 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 100 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 128 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 128 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 79 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 79 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 81 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 81 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 92 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 87 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 87 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 70 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 70 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 62 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 62 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 116 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 116 SVs from 26 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 161,038,044 | 161,038,044 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 161,038,051 | 161,038,051 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 161,134,912 | 161,134,912 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 161,134,915 | 161,134,915 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 79,767,838 | 79,767,838 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 79,768,264 | 79,768,264 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 79,924,147 | 79,924,147 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 79,924,150 | 79,924,150 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 81,532,421 | 81,532,421 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 81,532,426 | 81,532,426 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 127,878,012 | 127,878,012 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 127,878,018 | 127,878,018 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 99,608,424 | 99,608,424 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 99,608,425 | 99,608,425 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 99,793,710 | 99,793,710 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 99,793,721 | 99,793,721 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 99,996,423 | 99,996,423 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 99,996,439 | 99,996,439 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 99,997,076 | 99,997,076 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 99,997,076 | 99,997,076 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 43,056,753 | 43,056,753 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 43,056,778 | 43,056,778 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 43,352,315 | 43,352,315 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 43,352,316 | 43,352,316 | - |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000021.9 | Chr21 | 15,069,128 | 15,069,128 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000021.9 | Chr21 | 15,069,264 | 15,069,264 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187556.1 | Chr6|NT_18 7556.1 | 223,210 | 223,210 | + |
nsv6314491 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187556.1 | Chr6|NT_18 7556.1 | 223,216 | 223,216 | + |
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 161,894,555 | 161,894,555 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 161,894,562 | 161,894,562 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 161,991,423 | 161,991,423 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 161,991,426 | 161,991,426 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 79,816,988 | 79,816,988 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 79,817,414 | 79,817,414 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 79,973,297 | 79,973,297 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 79,973,300 | 79,973,300 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 81,581,572 | 81,581,572 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 81,581,577 | 81,581,577 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 100,056,300 | 100,056,300 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 100,056,301 | 100,056,301 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 100,241,586 | 100,241,586 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 100,241,597 | 100,241,597 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 100,444,299 | 100,444,299 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 100,444,315 | 100,444,315 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 100,444,952 | 100,444,952 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 100,444,952 | 100,444,952 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 128,199,157 | 128,199,157 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 128,199,163 | 128,199,163 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 43,450,556 | 43,450,556 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 43,450,581 | 43,450,581 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 43,746,118 | 43,746,118 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 43,746,119 | 43,746,119 | - | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000021.8 | Chr21 | 16,441,449 | 16,441,449 | + | ||
nsv6314491 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000021.8 | Chr21 | 16,441,585 | 16,441,585 | + |
Variant Call Information
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv17975794 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 161,038,044 | 161,038,044 | + |
nssv17975803 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 161,038,051 | 161,038,051 | - |
nssv17975802 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 161,134,912 | 161,134,912 | - |
nssv17975797 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 161,134,915 | 161,134,915 | + |
nssv17975794 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 79,767,838 | 79,767,838 | - |
nssv17975806 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 79,768,264 | 79,768,264 | - |
nssv17975805 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 79,924,147 | 79,924,147 | - |
nssv17975806 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 79,924,150 | 79,924,150 | + |
nssv17975795 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 81,532,421 | 81,532,421 | + |
nssv17975801 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 81,532,426 | 81,532,426 | + |
nssv17975805 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187556.1 | Chr6|NT_18 7556.1 | 223,210 | 223,210 | + |
nssv17975798 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187556.1 | Chr6|NT_18 7556.1 | 223,216 | 223,216 | + |
nssv17975802 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 99,608,424 | 99,608,424 | + |
nssv17975801 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 99,608,425 | 99,608,425 | - |
nssv17975800 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 99,793,710 | 99,793,710 | - |
nssv17975796 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 99,793,721 | 99,793,721 | + |
nssv17975797 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 99,996,423 | 99,996,423 | + |
nssv17975804 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 99,996,439 | 99,996,439 | - |
nssv17975803 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 99,997,076 | 99,997,076 | - |
nssv17975804 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 99,997,076 | 99,997,076 | + |
nssv17975805 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 127,878,012 | 127,878,012 | + |
nssv17975798 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 127,878,018 | 127,878,018 | + |
nssv17975798 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 43,056,753 | 43,056,753 | + |
nssv17975799 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 43,056,778 | 43,056,778 | + |
nssv17975800 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 43,352,315 | 43,352,315 | + |
nssv17975799 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 43,352,316 | 43,352,316 | - |
nssv17975795 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 15,069,128 | 15,069,128 | + |
nssv17975796 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 15,069,264 | 15,069,264 | + |
nssv17975794 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 161,894,555 | 161,894,555 | + | ||
nssv17975803 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 161,894,562 | 161,894,562 | - | ||
nssv17975802 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 161,991,423 | 161,991,423 | - | ||
nssv17975797 | Submitted genomic | GRCh37 (hg19) | NC_000002.11 | Chr2 | 161,991,426 | 161,991,426 | + | ||
nssv17975794 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 79,816,988 | 79,816,988 | - | ||
nssv17975806 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 79,817,414 | 79,817,414 | - | ||
nssv17975805 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 79,973,297 | 79,973,297 | - | ||
nssv17975806 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 79,973,300 | 79,973,300 | + | ||
nssv17975795 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 81,581,572 | 81,581,572 | + | ||
nssv17975801 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 81,581,577 | 81,581,577 | + | ||
nssv17975802 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 100,056,300 | 100,056,300 | + | ||
nssv17975801 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 100,056,301 | 100,056,301 | - | ||
nssv17975800 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 100,241,586 | 100,241,586 | - | ||
nssv17975796 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 100,241,597 | 100,241,597 | + | ||
nssv17975797 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 100,444,299 | 100,444,299 | + | ||
nssv17975804 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 100,444,315 | 100,444,315 | - | ||
nssv17975803 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 100,444,952 | 100,444,952 | - | ||
nssv17975804 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 100,444,952 | 100,444,952 | + | ||
nssv17975805 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 128,199,157 | 128,199,157 | + | ||
nssv17975798 | Submitted genomic | GRCh37 (hg19) | NC_000006.11 | Chr6 | 128,199,163 | 128,199,163 | + | ||
nssv17975798 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 43,450,556 | 43,450,556 | + | ||
nssv17975799 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 43,450,581 | 43,450,581 | + | ||
nssv17975800 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 43,746,118 | 43,746,118 | + | ||
nssv17975799 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 43,746,119 | 43,746,119 | - | ||
nssv17975795 | Submitted genomic | GRCh37 (hg19) | NC_000021.8 | Chr21 | 16,441,449 | 16,441,449 | + | ||
nssv17975796 | Submitted genomic | GRCh37 (hg19) | NC_000021.8 | Chr21 | 16,441,585 | 16,441,585 | + |