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dbVar

Database of genomic structural variation

nsv6400014

Organism: Homo sapiens

Study:nstd223 (Sedlazeck et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:694,903

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1630 SVs from 85 studies. See in: genome view

Submitted genomic112,085,398-112,780,300

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6400014	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	112,085,398	112,780,300
nsv6400014	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	111,421,095	112,115,997

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18212424	duplication	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18212424	Submitted genomic		NC_000005.10:g.112 085398_112780300du p	GRCh38 (hg38)		NC_000005.10	Chr5	112,085,398	112,780,300
nssv18212424	Remapped	Perfect	NC_000005.9:g.1114 21095_112115997dup	GRCh37.p13	First Pass	NC_000005.9	Chr5	111,421,095	112,115,997

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18212424	<0.001	2	39302

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