Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv6458608

Organism: Homo sapiens

Study:nstd223 (Sedlazeck et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,700

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 108 SVs from 25 studies. See in: genome view

Submitted genomic53,389,701-53,392,400

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6458608	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000012.12	Chr12	53,389,701	53,392,400
nsv6458608	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000012.11	Chr12	53,783,485	53,786,184

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18001454	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18001454	Submitted genomic		NC_000012.12:g.533 89701_53392400del	GRCh38 (hg38)		NC_000012.12	Chr12	53,389,701	53,392,400
nssv18001454	Remapped	Perfect	NC_000012.11:g.537 83485_53786184del	GRCh37.p13	First Pass	NC_000012.11	Chr12	53,783,485	53,786,184

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18001454	<0.001	1	38248

You are here: NCBI