nsv6605284
- Organism: Homo sapiens
- Study:nstd223 (Sedlazeck et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,900
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 192 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 184 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 51 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6605284 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000007.14 | Chr7 | 72,942,701 | 72,950,600 | ||
| nsv6605284 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000007.13 | Chr7 | 72,413,240 | 72,421,139 |
| nsv6605284 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871064.1 | Chr7|NW_00 3871064.1 | 471,937 | 479,836 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18219102 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18219102 | Submitted genomic | NC_000007.14:g.729 42701_72950600dup | GRCh38 (hg38) | NC_000007.14 | Chr7 | 72,942,701 | 72,950,600 | ||
| nssv18219102 | Remapped | Perfect | NW_003871064.1:g.4 71937_479836dup | GRCh37.p13 | First Pass | NW_003871064.1 | Chr7|NW_00 3871064.1 | 471,937 | 479,836 |
| nssv18219102 | Remapped | Perfect | NC_000007.13:g.724 13240_72421139dup | GRCh37.p13 | Second Pass | NC_000007.13 | Chr7 | 72,413,240 | 72,421,139 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18219102 | 0.001 | 48 | 38858 |