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dbVar

Database of genomic structural variation

nsv6620229

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:46,350

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 240 SVs from 62 studies. See in: genome view

Remapped(Score: Perfect):105,874,759-105,921,108

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6620229	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	105,874,759	105,921,108
nsv6620229	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000010.10	Chr10	107,634,517	107,680,866

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18305161	deletion	OSC6364	SNP array	Probe signal intensity	8
nssv18306622	deletion	OSC6574	SNP array	Probe signal intensity	13
nssv18308387	deletion	OSC6912	SNP array	Probe signal intensity	7
nssv18308412	deletion	OSC6939	SNP array	Probe signal intensity	15
nssv18318966	deletion	OSC8639	SNP array	Probe signal intensity	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18305161	Remapped	Perfect	NC_000010.11:g.(?_ 105874759)_(105921 108_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	105,874,759	105,921,108
nssv18306622	Remapped	Perfect	NC_000010.11:g.(?_ 105874759)_(105921 108_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	105,874,759	105,921,108
nssv18308387	Remapped	Perfect	NC_000010.11:g.(?_ 105874759)_(105921 108_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	105,874,759	105,921,108
nssv18308412	Remapped	Perfect	NC_000010.11:g.(?_ 105874759)_(105921 108_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	105,874,759	105,921,108
nssv18318966	Remapped	Perfect	NC_000010.11:g.(?_ 105874759)_(105921 108_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	105,874,759	105,921,108
nssv18305161	Submitted genomic		NC_000010.10:g.(?_ 107634517)_(107680 866_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	107,634,517	107,680,866
nssv18306622	Submitted genomic		NC_000010.10:g.(?_ 107634517)_(107680 866_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	107,634,517	107,680,866
nssv18308387	Submitted genomic		NC_000010.10:g.(?_ 107634517)_(107680 866_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	107,634,517	107,680,866
nssv18308412	Submitted genomic		NC_000010.10:g.(?_ 107634517)_(107680 866_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	107,634,517	107,680,866
nssv18318966	Submitted genomic		NC_000010.10:g.(?_ 107634517)_(107680 866_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	107,634,517	107,680,866

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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