nsv6621407
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:58,050
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 218 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 218 SVs from 49 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6621407 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 118,523,688 | 118,581,737 |
| nsv6621407 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 118,961,493 | 119,019,542 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18285575 | deletion | OSC2858 | SNP array | Probe signal intensity | nssv18285778, nssv18286483, nssv18286484 |
| nssv18322407 | deletion | OSC1428 | SNP array | Probe signal intensity | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18285575 | Remapped | Perfect | NC_000012.12:g.(?_ 118523688)_(118581 737_?)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 118,523,688 | 118,581,737 |
| nssv18322407 | Remapped | Perfect | NC_000012.12:g.(?_ 118523688)_(118581 737_?)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 118,523,688 | 118,581,737 |
| nssv18285575 | Submitted genomic | NC_000012.11:g.(?_ 118961493)_(119019 542_?)del | GRCh37 (hg19) | NC_000012.11 | Chr12 | 118,961,493 | 119,019,542 | ||
| nssv18322407 | Submitted genomic | NC_000012.11:g.(?_ 118961493)_(119019 542_?)del | GRCh37 (hg19) | NC_000012.11 | Chr12 | 118,961,493 | 119,019,542 |