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dbVar

Database of genomic structural variation

nsv6623574

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:267,193

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1391 SVs from 108 studies. See in: genome view

Remapped(Score: Perfect):21,558,405-21,825,552

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6623574	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	21,558,405	21,825,552
nsv6623574	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_017852933.1	Chr16\|NW_0 17852933.1	1,279,223	1,546,415
nsv6623574	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	21,569,726	21,836,873

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18313036	deletion	OSC7560	SNP array	Probe signal intensity	7
nssv18314581	deletion	OSC7823	SNP array	Probe signal intensity	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18313036	Remapped	Good	NW_017852933.1:g.( ?_1279223)_(154641 5_?)del	GRCh38.p12	Second Pass	NW_017852933.1	Chr16\|NW_0 17852933.1	1,279,223	1,546,415
nssv18314581	Remapped	Good	NW_017852933.1:g.( ?_1279223)_(154641 5_?)del	GRCh38.p12	Second Pass	NW_017852933.1	Chr16\|NW_0 17852933.1	1,279,223	1,546,415
nssv18313036	Remapped	Perfect	NC_000016.10:g.(?_ 21558405)_(2182555 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	21,558,405	21,825,552
nssv18314581	Remapped	Perfect	NC_000016.10:g.(?_ 21558405)_(2182555 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	21,558,405	21,825,552
nssv18313036	Submitted genomic		NC_000016.9:g.(?_2 1569726)_(21836873 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	21,569,726	21,836,873
nssv18314581	Submitted genomic		NC_000016.9:g.(?_2 1569726)_(21836873 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	21,569,726	21,836,873

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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