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dbVar

Database of genomic structural variation

nsv6623680

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:49,689

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 301 SVs from 50 studies. See in: genome view

Remapped(Score: Perfect):56,633,382-56,683,070

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6623680	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	56,633,382	56,683,070
nsv6623680	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	56,667,294	56,716,982

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18289736	duplication	OSC0357	SNP array	Probe signal intensity	8
nssv18294638	duplication	OSC4288	SNP array	Probe signal intensity	7
nssv18305538	duplication	OSC0670	SNP array	Probe signal intensity	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18289736	Remapped	Perfect	NC_000016.10:g.(?_ 56633382)_(5668307 0_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	56,633,382	56,683,070
nssv18294638	Remapped	Perfect	NC_000016.10:g.(?_ 56633382)_(5668307 0_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	56,633,382	56,683,070
nssv18305538	Remapped	Perfect	NC_000016.10:g.(?_ 56633382)_(5668307 0_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	56,633,382	56,683,070
nssv18289736	Submitted genomic		NC_000016.9:g.(?_5 6667294)_(56716982 _?)dup	GRCh37 (hg19)		NC_000016.9	Chr16	56,667,294	56,716,982
nssv18294638	Submitted genomic		NC_000016.9:g.(?_5 6667294)_(56716982 _?)dup	GRCh37 (hg19)		NC_000016.9	Chr16	56,667,294	56,716,982
nssv18305538	Submitted genomic		NC_000016.9:g.(?_5 6667294)_(56716982 _?)dup	GRCh37 (hg19)		NC_000016.9	Chr16	56,667,294	56,716,982

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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