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dbVar

Database of genomic structural variation

nsv6625457

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:107,026

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 983 SVs from 92 studies. See in: genome view

Remapped(Score: Perfect):6,961,171-7,068,196

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6625457	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	6,961,171	7,068,196
nsv6625457	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	6,961,182	7,068,207

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18283158	deletion	OSC2469	SNP array	Probe signal intensity	5
nssv18285112	deletion	OSC2529	SNP array	Probe signal intensity	5
nssv18292493	deletion	OSC3850	SNP array	Probe signal intensity	5

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18283158	Remapped	Perfect	NC_000019.10:g.(?_ 6961171)_(7068196_ ?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	6,961,171	7,068,196
nssv18285112	Remapped	Perfect	NC_000019.10:g.(?_ 6961171)_(7068196_ ?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	6,961,171	7,068,196
nssv18292493	Remapped	Perfect	NC_000019.10:g.(?_ 6961171)_(7068196_ ?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	6,961,171	7,068,196
nssv18283158	Submitted genomic		NC_000019.9:g.(?_6 961182)_(7068207_? )del	GRCh37 (hg19)		NC_000019.9	Chr19	6,961,182	7,068,207
nssv18285112	Submitted genomic		NC_000019.9:g.(?_6 961182)_(7068207_? )del	GRCh37 (hg19)		NC_000019.9	Chr19	6,961,182	7,068,207
nssv18292493	Submitted genomic		NC_000019.9:g.(?_6 961182)_(7068207_? )del	GRCh37 (hg19)		NC_000019.9	Chr19	6,961,182	7,068,207

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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