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dbVar

Database of genomic structural variation

nsv6656214

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:12,300

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 218 SVs from 44 studies. See in: genome view

Submitted genomic86,561,201-86,573,500

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6656214	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000001.11	Chr1	86,561,201	86,573,500
nsv6656214	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	87,026,884	87,039,183

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18426620	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18426620	Submitted genomic		NC_000001.11:g.865 61201_86573500del	GRCh38 (hg38)		NC_000001.11	Chr1	86,561,201	86,573,500
nssv18426620	Remapped	Perfect	NC_000001.10:g.870 26884_87039183del	GRCh37.p13	First Pass	NC_000001.10	Chr1	87,026,884	87,039,183

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18426620	0.003	686	256396

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