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dbVar

Database of genomic structural variation

nsv6682102

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:4,278

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 106 SVs from 19 studies. See in: genome view

Submitted genomic134,880,553-134,884,830

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6682102	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000002.12	Chr2	134,880,553	134,884,830
nsv6682102	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	135,638,123	135,642,400

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18442628	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18442628	Submitted genomic		NC_000002.12:g.134 880553_134884830de l	GRCh38 (hg38)		NC_000002.12	Chr2	134,880,553	134,884,830
nssv18442628	Remapped	Perfect	NC_000002.11:g.135 638123_135642400de l	GRCh37.p13	First Pass	NC_000002.11	Chr2	135,638,123	135,642,400

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18442628	4e-06	1	276262

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