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dbVar

Database of genomic structural variation

nsv6729281

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:4,893

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 157 SVs from 41 studies. See in: genome view

Submitted genomic169,472,489-169,477,381

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6729281	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000003.12	Chr3	169,472,489	169,477,381
nsv6729281	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	169,190,277	169,195,169

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18476446	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18476446	Submitted genomic		NC_000003.12:g.169 472489_169477381de l	GRCh38 (hg38)		NC_000003.12	Chr3	169,472,489	169,477,381
nssv18476446	Remapped	Perfect	NC_000003.11:g.169 190277_169195169de l	GRCh37.p13	First Pass	NC_000003.11	Chr3	169,190,277	169,195,169

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18476446	1.1e-05	3	275448

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