Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv6778149

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:85,314

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 290 SVs from 34 studies. See in: genome view

Submitted genomic151,245,914-151,331,227

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6778149	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	151,245,914	151,331,227
nsv6778149	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	150,625,475	150,710,788

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18507963	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18507963	Submitted genomic		NC_000005.10:g.151 245914_151331227de l	GRCh38 (hg38)		NC_000005.10	Chr5	151,245,914	151,331,227
nssv18507963	Remapped	Perfect	NC_000005.9:g.1506 25475_150710788del	GRCh37.p13	First Pass	NC_000005.9	Chr5	150,625,475	150,710,788

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18507963	1.8e-05	5	276152

You are here: NCBI