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dbVar

Database of genomic structural variation

nsv6784856

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:600

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 121 SVs from 28 studies. See in: genome view

Submitted genomic178,015,401-178,016,000

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6784856	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	178,015,401	178,016,000
nsv6784856	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	177,442,402	177,443,001

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18510653	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18510653	Submitted genomic		NC_000005.10:g.178 015401_178016000de l	GRCh38 (hg38)		NC_000005.10	Chr5	178,015,401	178,016,000
nssv18510653	Remapped	Perfect	NC_000005.9:g.1774 42402_177443001del	GRCh37.p13	First Pass	NC_000005.9	Chr5	177,442,402	177,443,001

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18510653	0.013	3174	244934

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