Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv6835421

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:154,432

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 417 SVs from 54 studies. See in: genome view

Submitted genomic53,686,759-53,841,190

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6835421	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000007.14	Chr7	53,686,759	53,841,190
nsv6835421	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	53,754,452	53,908,883

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18545985	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18545985	Submitted genomic		NC_000007.14:g.536 86759_53841190del	GRCh38 (hg38)		NC_000007.14	Chr7	53,686,759	53,841,190
nssv18545985	Remapped	Perfect	NC_000007.13:g.537 54452_53908883del	GRCh37.p13	First Pass	NC_000007.13	Chr7	53,754,452	53,908,883

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18545985	7e-06	2	275948

You are here: NCBI