nsv6890945
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:49
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 111 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 3 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6890945 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000010.11 | Chr10 | 17,871,708 | 17,871,756 | ||
| nsv6890945 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003315932.1 | Chr10|NW_0 03315932.1 | 300,499 | 300,547 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18334064 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18334064 | Submitted genomic | NC_000010.11:g.178 71708_17871756del | GRCh38 (hg38) | NC_000010.11 | Chr10 | 17,871,708 | 17,871,756 | ||
| nssv18334064 | Remapped | Perfect | NW_003315932.1:g.3 00499_300547del | GRCh37.p13 | First Pass | NW_003315932.1 | Chr10|NW_0 03315932.1 | 300,499 | 300,547 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18334064 | 4e-06 | 1 | 254214 |