nsv6987154
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:153,678
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 660 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 657 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 74 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6987154 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 41,277,005 | 41,430,682 | ||
| nsv6987154 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 39,433,257 | 39,586,934 |
| nsv6987154 | Remapped | Pass | GRCh37.p13 | PATCHES | First Pass | NW_003315953.1 | Chr17|NW_0 03315953.1 | 16,589 | 119,548 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18626835 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18626835 | Submitted genomic | NC_000017.11:g.412 77005_41430682dup | GRCh38 (hg38) | NC_000017.11 | Chr17 | 41,277,005 | 41,430,682 | ||
| nssv18626835 | Remapped | Pass | NW_003315953.1:g.1 6589_119548dup | GRCh37.p13 | First Pass | NW_003315953.1 | Chr17|NW_0 03315953.1 | 16,589 | 119,548 |
| nssv18626835 | Remapped | Perfect | NC_000017.10:g.394 33257_39586934dup | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 39,433,257 | 39,586,934 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18626835 | 8e-06 | 2 | 235568 |