nsv6991550
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:15,512
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 129 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 125 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 16 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6991550 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 64,536,751 | 64,552,262 | ||
| nsv6991550 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000017.10 | Chr17 | 62,532,869 | 62,548,380 |
| nsv6991550 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003315947.1 | Chr17|NW_0 03315947.1 | 340,598 | 356,109 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18628852 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18628852 | Submitted genomic | NC_000017.11:g.645 36751_64552262dup | GRCh38 (hg38) | NC_000017.11 | Chr17 | 64,536,751 | 64,552,262 | ||
| nssv18628852 | Remapped | Perfect | NW_003315947.1:g.3 40598_356109dup | GRCh37.p13 | First Pass | NW_003315947.1 | Chr17|NW_0 03315947.1 | 340,598 | 356,109 |
| nssv18628852 | Remapped | Perfect | NC_000017.10:g.625 32869_62548380dup | GRCh37.p13 | Second Pass | NC_000017.10 | Chr17 | 62,532,869 | 62,548,380 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18628852 | 4e-06 | 1 | 276108 |