Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv6996520

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,681

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 128 SVs from 22 studies. See in: genome view

Submitted genomic58,688,348-58,691,028

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6996520	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000017.11	Chr17	58,688,348	58,691,028
nsv6996520	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000017.10	Chr17	56,765,709	56,768,389

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18413138	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18413138	Submitted genomic		NC_000017.11:g.586 88348_58691028del	GRCh38 (hg38)		NC_000017.11	Chr17	58,688,348	58,691,028
nssv18413138	Remapped	Perfect	NC_000017.10:g.567 65709_56768389del	GRCh37.p13	First Pass	NC_000017.10	Chr17	56,765,709	56,768,389

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18413138	4e-06	1	276226

You are here: NCBI