nsv7089179
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:299
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 239 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 239 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7089179 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 77,739,715 | 77,740,013 | ||
| nsv7089179 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 76,995,192 | 76,995,490 |
| nsv7089179 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871101.3 | ChrX|NW_00 3871101.3 | 296,977 | 297,275 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18659490 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18659490 | Submitted genomic | NC_000023.11:g.777 39715_77740013dup | GRCh38 (hg38) | NC_000023.11 | ChrX | 77,739,715 | 77,740,013 | ||
| nssv18659490 | Remapped | Perfect | NW_003871101.3:g.2 96977_297275dup | GRCh37.p13 | First Pass | NW_003871101.3 | ChrX|NW_00 3871101.3 | 296,977 | 297,275 |
| nssv18659490 | Remapped | Perfect | NC_000023.10:g.769 95192_76995490dup | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 76,995,192 | 76,995,490 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18659490 | <0.001 | 128 | 216582 |