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dbVar

Database of genomic structural variation

nsv7094004

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:3,505

Description:NC_000013.10:g.(?_52511432)_(52514936_?)del AND Wilson disease
Publication(s):Albanese et al. 2011, Kalia et al. 2016, Miller et al. 2021, Miller et al. 2022, Roberts et al. 2008, Weiss et al. 1999

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 107 SVs from 22 studies. See in: genome view

Remapped(Score: Perfect):51,937,296-51,940,800

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv7094004	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	51,937,296	51,940,800
nsv7094004	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000013.10	Chr13	52,511,432	52,514,936

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv18791086	deletion	Multiple	Multiple	WILSON DISEASE; Wilson Disease; Wilson disease; Wilson disease	Pathogenic	ClinVar	RCV003119197.2, VCV002422251.2

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18791086	Remapped	Perfect	NC_000013.11:g.(?_ 51937296)_(5194080 0_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	51,937,296	51,940,800
nssv18791086	Submitted genomic		NC_000013.10:g.(?_ 52511432)_(5251493 6_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	52,511,432	52,514,936

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv18791086	GRCh37: NC_000013.10:g.(?_52511432)_(52514936_?)del	deletion	germline	WILSON DISEASE; Wilson Disease; Wilson disease; Wilson disease	Pathogenic	ClinVar	RCV003119197.2, VCV002422251.2

No genotype data were submitted for this variant

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