nsv832161
- Organism: Homo sapiens
- Study:nstd68 (Wong et al. 2006)
- Variant Type:copy number variation
- Method Type:BAC aCGH
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:120,792
- Publication(s):Wong et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 376 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 147 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 379 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 74 SVs from 11 studies. See in: genome view
Overlapping variant regions from other studies: 14 SVs from 5 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv832161 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 56,278,697 | - | 56,399,488 |
| nsv832161 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003871073.1 | Chr11|NW_0 03871073.1 | 89,446 | 187,300 | - |
| nsv832161 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 56,046,173 | - | 56,166,964 |
| nsv832161 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_003871073.1 | Chr11|NW_0 03871073.1 | 89,446 | 200,998 | - |
| nsv832161 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000011.8 | Chr11 | 55,802,749 | - | 55,923,540 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv1449204 | copy number gain | BAC aCGH | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv1449204 | Remapped | Pass | NW_003871073.1:g.( 89446_?)_(187300_? )dup | GRCh38.p12 | Second Pass | NW_003871073.1 | Chr11|NW_0 03871073.1 | 89,446 | 187,300 | - |
| nssv1449204 | Remapped | Perfect | NC_000011.10:g.(56 278697_?)_(?_56399 488)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 56,278,697 | - | 56,399,488 |
| nssv1449204 | Remapped | Pass | NW_003871073.1:g.( 89446_?)_(200998_? )dup | GRCh37.p13 | Second Pass | NW_003871073.1 | Chr11|NW_0 03871073.1 | 89,446 | 200,998 | - |
| nssv1449204 | Remapped | Perfect | NC_000011.9:g.(560 46173_?)_(?_561669 64)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 56,046,173 | - | 56,166,964 |
| nssv1449204 | Submitted genomic | NC_000011.8:g.(558 02749_?)_(?_559235 40)dup | NCBI35 (hg17) | NC_000011.8 | Chr11 | 55,802,749 | - | 55,923,540 |