nsv869631
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:102,657
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2723 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 2723 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 1311 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv869631 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 78,232,886 | 78,249,465 | 78,313,611 | 78,335,542 |
| nsv869631 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 78,942,603 | 78,959,182 | 79,023,328 | 79,045,259 |
| nsv869631 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 78,999,322 | 79,015,901 | 79,080,047 | 79,101,978 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1497415 | copy number loss | SCOS_16 | Oligo aCGH | Probe signal intensity | 29 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1497415 | Remapped | Perfect | NC_000006.12:g.(78 232886_78249465)_( 78313611_78335542) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,232,886 | 78,249,465 | 78,313,611 | 78,335,542 |
| nssv1497415 | Remapped | Perfect | NC_000006.11:g.(78 942603_78959182)_( 79023328_79045259) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,942,603 | 78,959,182 | 79,023,328 | 79,045,259 |
| nssv1497415 | Submitted genomic | NC_000006.10:g.(78 999322_79015901)_( 79080047_79101978) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 78,999,322 | 79,015,901 | 79,080,047 | 79,101,978 |