nsv870178
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:118,446
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 873 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 877 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 373 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv870178 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 6,941,584 | 6,944,434 | 7,056,838 | 7,060,029 |
| nsv870178 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 6,941,584 | 6,944,434 | 7,056,838 | 7,060,029 |
| nsv870178 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 6,931,584 | 6,934,434 | 7,046,838 | 7,050,029 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1496571 | copy number loss | CONTROL_48 | Oligo aCGH | Probe signal intensity | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1496571 | Remapped | Perfect | NC_000009.12:g.(69 41584_6944434)_(70 56838_7060029)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 6,941,584 | 6,944,434 | 7,056,838 | 7,060,029 |
| nssv1496571 | Remapped | Perfect | NC_000009.11:g.(69 41584_6944434)_(70 56838_7060029)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 6,941,584 | 6,944,434 | 7,056,838 | 7,060,029 |
| nssv1496571 | Submitted genomic | NC_000009.10:g.(69 31584_6934434)_(70 46838_7050029)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 6,931,584 | 6,934,434 | 7,046,838 | 7,050,029 |