nsv870339
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:133,674
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1079 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 354 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 1079 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 443 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv870339 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 1,715,223 | 1,725,224 | 1,838,940 | 1,848,896 |
| nsv870339 | Remapped | Good | GRCh38.p12 | PATCHES | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | - | 1 | 127,245 | 127,245 |
| nsv870339 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 1,715,224 | 1,725,225 | 1,838,941 | 1,848,897 |
| nsv870339 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 1,705,224 | 1,715,225 | 1,828,941 | 1,838,897 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1496105 | copy number loss | OAT_68 | Oligo aCGH | Probe signal intensity | 20 |
| nssv1498445 | copy number loss | OAT_03 | Oligo aCGH | Probe signal intensity | 14 |
| nssv1498602 | copy number loss | CONTROL_71 | Oligo aCGH | Probe signal intensity | 25 |
| nssv1498741 | copy number loss | CONTROL_86 | Oligo aCGH | Probe signal intensity | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1496105 | Remapped | Good | NW_019805503.1:g.( ?_1)_(127245_12724 5)del | GRCh38.p12 | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | - | 1 | 127,245 | 127,245 |
| nssv1498445 | Remapped | Good | NW_019805503.1:g.( ?_1)_(127245_12724 5)del | GRCh38.p12 | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | - | 1 | 127,245 | 127,245 |
| nssv1498602 | Remapped | Good | NW_019805503.1:g.( ?_1)_(127245_12724 5)del | GRCh38.p12 | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | - | 1 | 127,245 | 127,245 |
| nssv1498741 | Remapped | Good | NW_019805503.1:g.( ?_1)_(127245_12724 5)del | GRCh38.p12 | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | - | 1 | 127,245 | 127,245 |
| nssv1496105 | Remapped | Perfect | NC_000018.10:g.(17 15223_1725224)_(18 38940_1848896)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 1,715,223 | 1,725,224 | 1,838,940 | 1,848,896 |
| nssv1498445 | Remapped | Perfect | NC_000018.10:g.(17 15223_1725224)_(18 38940_1848896)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 1,715,223 | 1,725,224 | 1,838,940 | 1,848,896 |
| nssv1498602 | Remapped | Perfect | NC_000018.10:g.(17 15223_1725224)_(18 38940_1848896)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 1,715,223 | 1,725,224 | 1,838,940 | 1,848,896 |
| nssv1498741 | Remapped | Perfect | NC_000018.10:g.(17 15223_1725224)_(18 38940_1848896)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 1,715,223 | 1,725,224 | 1,838,940 | 1,848,896 |
| nssv1496105 | Remapped | Perfect | NC_000018.9:g.(171 5224_1725225)_(183 8941_1848897)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 1,715,224 | 1,725,225 | 1,838,941 | 1,848,897 |
| nssv1498445 | Remapped | Perfect | NC_000018.9:g.(171 5224_1725225)_(183 8941_1848897)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 1,715,224 | 1,725,225 | 1,838,941 | 1,848,897 |
| nssv1498602 | Remapped | Perfect | NC_000018.9:g.(171 5224_1725225)_(183 8941_1848897)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 1,715,224 | 1,725,225 | 1,838,941 | 1,848,897 |
| nssv1498741 | Remapped | Perfect | NC_000018.9:g.(171 5224_1725225)_(183 8941_1848897)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 1,715,224 | 1,725,225 | 1,838,941 | 1,848,897 |
| nssv1496105 | Submitted genomic | NC_000018.8:g.(170 5224_1715225)_(182 8941_1838897)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 1,705,224 | 1,715,225 | 1,828,941 | 1,838,897 | ||
| nssv1498445 | Submitted genomic | NC_000018.8:g.(170 5224_1715225)_(182 8941_1838897)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 1,705,224 | 1,715,225 | 1,828,941 | 1,838,897 | ||
| nssv1498602 | Submitted genomic | NC_000018.8:g.(170 5224_1715225)_(182 8941_1838897)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 1,705,224 | 1,715,225 | 1,828,941 | 1,838,897 | ||
| nssv1498741 | Submitted genomic | NC_000018.8:g.(170 5224_1715225)_(182 8941_1838897)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 1,705,224 | 1,715,225 | 1,828,941 | 1,838,897 |