nsv870348
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:140,702
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2686 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2690 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 919 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv870348 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,995,446 | 12,007,047 | 12,114,297 | 12,136,147 |
| nsv870348 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,995,446 | 12,007,047 | 12,114,297 | 12,136,147 |
| nsv870348 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 11,985,446 | 11,997,047 | 12,104,297 | 12,126,147 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1498244 | copy number loss | CONTROL_84 | Oligo aCGH | Probe signal intensity | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1498244 | Remapped | Perfect | NC_000009.12:g.(11 995446_12007047)_( 12114297_12136147) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,995,446 | 12,007,047 | 12,114,297 | 12,136,147 |
| nssv1498244 | Remapped | Perfect | NC_000009.11:g.(11 995446_12007047)_( 12114297_12136147) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,995,446 | 12,007,047 | 12,114,297 | 12,136,147 |
| nssv1498244 | Submitted genomic | NC_000009.10:g.(11 985446_11997047)_( 12104297_12126147) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,985,446 | 11,997,047 | 12,104,297 | 12,126,147 |