nsv870412
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:116,061
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 296 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 296 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv870412 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 37,658,898 | 37,671,705 | 37,763,459 | 37,774,958 |
| nsv870412 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 37,951,099 | 37,963,906 | 38,055,660 | 38,067,159 |
| nsv870412 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 35,738,391 | 35,751,198 | 35,842,952 | 35,854,451 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1497252 | copy number loss | OAT_68 | Oligo aCGH | Probe signal intensity | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1497252 | Remapped | Perfect | NC_000015.10:g.(37 658898_37671705)_( 37763459_37774958) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 37,658,898 | 37,671,705 | 37,763,459 | 37,774,958 |
| nssv1497252 | Remapped | Perfect | NC_000015.9:g.(379 51099_37963906)_(3 8055660_38067159)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 37,951,099 | 37,963,906 | 38,055,660 | 38,067,159 |
| nssv1497252 | Submitted genomic | NC_000015.8:g.(357 38391_35751198)_(3 5842952_35854451)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 35,738,391 | 35,751,198 | 35,842,952 | 35,854,451 |