nsv901055
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:43,607
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 830 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 830 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 311 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv901055 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 113,068,666 | 113,069,285 | 113,109,612 | 113,112,272 |
| nsv901055 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 113,722,980 | 113,723,599 | 113,763,926 | 113,766,586 |
| nsv901055 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 112,770,981 | 112,771,600 | 112,811,927 | 112,814,587 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1595405 | copy number loss | IS40230 | SNP array | SNP genotyping analysis | 131 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1595405 | Remapped | Perfect | NC_000013.11:g.(11 3068666_113069285) _(113109612_113112 272)del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 113,068,666 | 113,069,285 | 113,109,612 | 113,112,272 |
| nssv1595405 | Remapped | Perfect | NC_000013.10:g.(11 3722980_113723599) _(113763926_113766 586)del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 113,722,980 | 113,723,599 | 113,763,926 | 113,766,586 |
| nssv1595405 | Submitted genomic | NC_000013.9:g.(112 770981_112771600)_ (112811927_1128145 87)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 112,770,981 | 112,771,600 | 112,811,927 | 112,814,587 |