Search Summary
Search Criteria
Genotype Selection - Genes
338675
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Search Results
Association Results | No data found. | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 1626 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 1 of 1 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | No data found. | Searched by traits retrieved from page 1 of association results. |
Genome View | 1 gene over 1 chromosome. |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | OR5AP2 | olfactory receptor family 5 subfamily AP member 2 | 11 | : 56,642,439 - 56,641,489 | ||||||
| ||||||||||
Association Results
No association data found.
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{
"section": "assoc",
"summary": "No data found.",
"mesh": [
],
"genes": [],
"snps": [],
"page": 1,
"call": "BuildGaP",
"pageSize": 50,
"recCount": 0
}
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2134980277 | 11 | : 56,644,399 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
2 | rs2134980272 | 11 | : 56,644,394 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
3 | rs2134980270 | 11 | : 56,644,390 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
4 | rs2134980190 | 11 | : 56,644,296 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
5 | rs2134979988 | 11 | : 56,644,038 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
6 | rs2134979936 | 11 | : 56,643,976 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
7 | rs2134979913 | 11 | : 56,643,909 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
8 | rs2134979862 | 11 | : 56,643,863 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
9 | rs2134979809 | 11 | : 56,643,790 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
10 | rs2134979803 | 11 | : 56,643,788 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
11 | rs2134979727 | 11 | : 56,643,693 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
12 | rs2134979724 | 11 | : 56,643,671 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
13 | rs2134979715 | 11 | : 56,643,654 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
14 | rs2134979710 | 11 | : 56,643,638 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
15 | rs2134979708 | 11 | : 56,643,634 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
16 | rs2134979697 | 11 | : 56,643,608 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
17 | rs2134979668 | 11 | : 56,643,561 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
18 | rs2134979640 | 11 | : 56,643,505 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
19 | rs2134979629 | 11 | : 56,643,478 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
20 | rs2134979608 | 11 | : 56,643,438 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
21 | rs2134979472 | 11 | : 56,643,327 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
22 | rs2134979420 | 11 | : 56,643,302 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
23 | rs2134979410 | 11 | : 56,643,299 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
24 | rs2134979331 | 11 | : 56,643,268 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
25 | rs2134979263 | 11 | : 56,643,213 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
26 | rs2134979259 | 11 | : 56,643,205 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
27 | rs2134979228 | 11 | : 56,643,197 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
28 | rs2134979163 | 11 | : 56,643,116 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
29 | rs2134979158 | 11 | : 56,643,113 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
30 | rs2134979087 | 11 | : 56,643,024 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
31 | rs2134979079 | 11 | : 56,643,014 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
32 | rs2134979078 | 11 | : 56,643,013 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
33 | rs2134979062 | 11 | : 56,642,956 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
34 | rs2134979038 | 11 | : 56,642,919 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
35 | rs2134979032 | 11 | : 56,642,914 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
36 | rs2134978983 | 11 | : 56,642,818 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
37 | rs2134978958 | 11 | : 56,642,785 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
38 | rs2134978957 | 11 | : 56,642,784 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
39 | rs2134978920 | 11 | : 56,642,728 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | Yes |
40 | rs2134978914 | 11 | : 56,642,720 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
41 | rs2134978807 | 11 | : 56,642,496 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
42 | rs2134978762 | 11 | : 56,642,448 | upstream_transcript_variant, 2KB_upstream_variant | OR5AP2 | n/a |
43 | rs2134978715 | 11 | : 56,642,414 | coding_sequence_variant, missense_variant | OR5AP2 | n/a |
44 | rs2134978600 | 11 | : 56,642,309 | coding_sequence_variant, missense_variant | OR5AP2 | n/a |
45 | rs2134978540 | 11 | : 56,642,269 | frameshift_variant, coding_sequence_variant | OR5AP2 | Yes |
46 | rs2134978532 | 11 | : 56,642,267 | coding_sequence_variant, missense_variant | OR5AP2 | n/a |
47 | rs2134978476 | 11 | : 56,642,244 | coding_sequence_variant, missense_variant | OR5AP2 | n/a |
48 | rs2134978435 | 11 | : 56,642,218 | coding_sequence_variant, missense_variant | OR5AP2 | n/a |
49 | rs2134978434 | 11 | : 56,642,214 | coding_sequence_variant, missense_variant | OR5AP2 | n/a |
50 | rs2134978409 | 11 | : 56,642,195 | coding_sequence_variant, missense_variant | OR5AP2 | n/a |
eQTL Data
1 - 1 of 1
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Study | Result count | External references | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
⇩ | ID | Name | cis | trans | Markers | Probes | Subjects | PubMed ID | Ind. genotypes | Mol. phenotypes |
⇩ | 40 | FHS_eQTL | 0 | 752 | 722 | 23 | 5622 | 28122634 | phs000342 | phs000363 |
dbGaP Studies
No dbGaP study data found.
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{
"section": "GAP",
"summary": "No data found.",
"retstart": 0,
"pageSize": 50,
"count": ""
}