Search Summary
Search Criteria
Genotype Selection - Genes
440021
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Search Results
Association Results | No data found. | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 1483 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 42 of 42 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | No data found. | Searched by traits retrieved from page 1 of association results. |
Genome View | 1 gene over 1 chromosome. |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | KRTAP5-2 | keratin associated protein 5-2 | 11 | : 1,598,294 - 1,597,177 | ||||||
| ||||||||||
Association Results
No association data found.
Modify Search
{
"section": "assoc",
"summary": "No data found.",
"mesh": [
],
"genes": [],
"snps": [],
"page": 1,
"call": "BuildGaP",
"pageSize": 50,
"recCount": 0
}
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2133497053 | 11 | : 1,600,182 | upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-2 | n/a |
2 | rs2133496988 | 11 | : 1,600,121 | upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-2 | Yes |
3 | rs2133496921 | 11 | : 1,600,089 | upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-2 | n/a |
4 | rs2133496871 | 11 | : 1,600,036 | upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-2 | Yes |
5 | rs2133496572 | 11 | : 1,599,795 | upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-2 | Yes |
6 | rs2133496190 | 11 | : 1,599,571 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
7 | rs2133496049 | 11 | : 1,599,494 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
8 | rs2133495856 | 11 | : 1,599,375 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
9 | rs2133495705 | 11 | : 1,599,272 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
10 | rs2133495606 | 11 | : 1,599,227 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
11 | rs2133495600 | 11 | : 1,599,224 | 500B_downstream_variant, downstream_transcript_variant, 2KB_upstream_variant, upstream_transcript_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
12 | rs2133495523 | 11 | : 1,599,169 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
13 | rs2133495497 | 11 | : 1,599,150 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
14 | rs2133495080 | 11 | : 1,598,850 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
15 | rs2133495073 | 11 | : 1,598,841 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
16 | rs2133494950 | 11 | : 1,598,751 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
17 | rs2133494923 | 11 | : 1,598,729 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
18 | rs2133494722 | 11 | : 1,598,578 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
19 | rs2133494709 | 11 | : 1,598,566 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
20 | rs2133494701 | 11 | : 1,598,559 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
21 | rs2133494656 | 11 | : 1,598,515 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
22 | rs2133494510 | 11 | : 1,598,440 | non_coding_transcript_variant, upstream_transcript_variant, 2KB_upstream_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
23 | rs2133494160 | 11 | : 1,598,235 | non_coding_transcript_variant, coding_sequence_variant, missense_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
24 | rs2133493865 | 11 | : 1,598,161 | non_coding_transcript_variant, coding_sequence_variant, synonymous_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
25 | rs2133493686 | 11 | : 1,598,121 | non_coding_transcript_variant, coding_sequence_variant, missense_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
26 | rs2133493616 | 11 | : 1,598,105 | non_coding_transcript_variant, coding_sequence_variant, missense_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
27 | rs2133493492 | 11 | : 1,598,060 | non_coding_transcript_variant, coding_sequence_variant, missense_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
28 | rs2133493465 | 11 | : 1,598,050 | non_coding_transcript_variant, coding_sequence_variant, synonymous_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
29 | rs2133493457 | 11 | : 1,598,046 | non_coding_transcript_variant, coding_sequence_variant, missense_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
30 | rs2133493388 | 11 | : 1,598,025 | non_coding_transcript_variant, coding_sequence_variant, missense_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
31 | rs2133493199 | 11 | : 1,597,974 | non_coding_transcript_variant, inframe_indel, coding_sequence_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
32 | rs2133493132 | 11 | : 1,597,968 | non_coding_transcript_variant, frameshift_variant, coding_sequence_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
33 | rs2133493124 | 11 | : 1,597,967 | non_coding_transcript_variant, inframe_deletion, coding_sequence_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
34 | rs2133492953 | 11 | : 1,597,943 | non_coding_transcript_variant, frameshift_variant, coding_sequence_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
35 | rs2133492931 | 11 | : 1,597,939 | non_coding_transcript_variant, coding_sequence_variant, synonymous_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
36 | rs2133492674 | 11 | : 1,597,837 | non_coding_transcript_variant, coding_sequence_variant, synonymous_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
37 | rs2133492632 | 11 | : 1,597,821 | non_coding_transcript_variant, stop_gained, coding_sequence_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
38 | rs2133492607 | 11 | : 1,597,816 | non_coding_transcript_variant, coding_sequence_variant, synonymous_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
39 | rs2133492565 | 11 | : 1,597,803 | non_coding_transcript_variant, coding_sequence_variant, missense_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
40 | rs2133492512 | 11 | : 1,597,783 | non_coding_transcript_variant, coding_sequence_variant, synonymous_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
41 | rs2133492457 | 11 | : 1,597,756 | non_coding_transcript_variant, coding_sequence_variant, synonymous_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
42 | rs2133492322 | 11 | : 1,597,707 | non_coding_transcript_variant, 3_prime_UTR_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
43 | rs2133492113 | 11 | : 1,597,570 | non_coding_transcript_variant, 3_prime_UTR_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
44 | rs2133491980 | 11 | : 1,597,473 | non_coding_transcript_variant, 3_prime_UTR_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
45 | rs2133491968 | 11 | : 1,597,466 | non_coding_transcript_variant, 3_prime_UTR_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
46 | rs2133491944 | 11 | : 1,597,450 | non_coding_transcript_variant, 3_prime_UTR_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
47 | rs2133491552 | 11 | : 1,597,217 | 3_prime_UTR_variant, intron_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
48 | rs2133491519 | 11 | : 1,597,192 | 3_prime_UTR_variant, intron_variant | KRTAP5-AS1, KRTAP5-2 | Yes |
49 | rs2133491489 | 11 | : 1,597,171 | 500B_downstream_variant, downstream_transcript_variant, intron_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
50 | rs2133491259 | 11 | : 1,597,009 | 500B_downstream_variant, downstream_transcript_variant, intron_variant | KRTAP5-AS1, KRTAP5-2 | n/a |
eQTL Data
1 - 42 of 42
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{ "section": "eqtl", "summary": "1 - 42 of 42"}
dbGaP Studies
No dbGaP study data found.
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{
"section": "GAP",
"summary": "No data found.",
"retstart": 0,
"pageSize": 50,
"count": ""
}