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Items: 1 to 20 of 47

1.

Effect of supplementation of a minimal culture medium with inulin, corn fiber and pectin, compared with a glucose condition, on the gene expression of a set of bacteria of the intestinal microbiota

(Submitter supplied) The aim of this RNA-sequencing study is to measure differential gene expression in 4 intestinal bacteria (Bacteroides xylanisolvens, Bacteroides thetaiotaomicron, Subdoligranulum variabile and Roseburia intestinalis). The data highlight the coordinated action of genes within the same locus involved in the degradation of complex carbohydrates. These loci are well characterized in Bacteroidetes species and referred to as polysaccharide utilization loci. more...
Organism:
Subdoligranulum variabile; Bacteroides thetaiotaomicron; Roseburia intestinalis; Bacteroides xylanisolvens
Type:
Expression profiling by high throughput sequencing
4 related Platforms
36 Samples
Download data: CSV
Series
Accession:
GSE237111
ID:
200237111

2.

RNA-seq of human gut Bacteroides xylanisolvens and Bacteroides ovatus isolates grown on mucin O-linked glycans compared to glucose

(Submitter supplied) Purpose: Examining the transcriptome of human gut bacteria (Bacteroides xylanisolvens/Bacteroides ovatus) that grow on mucin O-linked glycans as a sole carbon source Methods: Strains were grown on 10 mg/ml mucin O-linked glycans (MOG) or 5 mg/ml glucose as a sole carbon source in vitro. Fold change was calculated as MOG over glucose. Once cells reached an optical density corresponding to mid-log phase growth, RNA was isolated and rRNA depleted. more...
Organism:
Bacteroides ovatus; Bacteroides xylanisolvens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL28983 GPL21072
24 Samples
Download data: XLSX
Series
Accession:
GSE155869
ID:
200155869

SRA Run Selector

3.

RNA-seq of human gut bacterial isolates grown on seaweed polysaccharides

(Submitter supplied) Purpose: Examining the transcriptome of human gut bacteria that grow on seaweed polysaccharides as a sole carbon source Methods: Strains were grown on 5 mg/ml seaweed polysaccharides (carrageenan, agarose and/or poprhyran respective to strain) or galactose as a sole carbon source in vitro. Fold change was calculated as seaweed polysaccharide over galactose with n=2 biological replicates. Once cells reached an optical density corresponding to mid-log phase growth, RNA was isolated and rRNA depleted. more...
Organism:
Bacteroides xylanisolvens; Bacteroides thetaiotaomicron; Faecalicatena contorta; Faecalicatena fissicatena
Type:
Expression profiling by high throughput sequencing
4 related Platforms
24 Samples
Download data: XLSX
Series
Accession:
GSE149357
ID:
200149357

SRA Run Selector

4.

RNA-seq analysis of Bacteroides xylanisolvens XB1AT grown on pectin or xylan

(Submitter supplied) Dietary fiber degradation is a key function of the human gut microbiota. The aim of this study was to increase our knowledge on the degradation of plant cell wall polysaccharide degradation by a prominent human gut bacterial species, Bacteroides xylanisolvens. The transcriptome analysis of B. xylanisolvens XB1AT revealed the existence of six and two genomic loci dedicated to the degradation of pectins and xylan, respectively. more...
Organism:
Bacteroides xylanisolvens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21072
24 Samples
Download data: TXT
Series
Accession:
GSE74379
ID:
200074379

PubMed Full text in PMC Similar studies SRA Run Selector

5.

B.xylanisolvens, inulin, R3

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595594
ID:
307595594

SRA Run Selector

6.

B.xylanisolvens, inulin, R2

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595593
ID:
307595593

SRA Run Selector

7.

B.xylanisolvens, inulin, R1

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595592
ID:
307595592

SRA Run Selector

8.

B.xylanisolvens, corn fiber, R3

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595591
ID:
307595591

SRA Run Selector

9.

B.xylanisolvens, corn fiber, R2

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595590
ID:
307595590

SRA Run Selector

10.

B.xylanisolvens, corn fiber, R1

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595589
ID:
307595589

SRA Run Selector

11.

B.xylanisolvens, glucose, R3

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595588
ID:
307595588

SRA Run Selector

12.

B.xylanisolvens, glucose, R2

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595587
ID:
307595587

SRA Run Selector

13.

B.xylanisolvens, glucose, R1

Organism:
Bacteroides xylanisolvens
Source name:
Bacteria
Platform:
GPL33567
Series:
GSE237111
Download data
Sample
Accession:
GSM7595586
ID:
307595586

SRA Run Selector

14.

Bacteroides xylanisolvens D22 mucin O-linked glycans 3

Organism:
Bacteroides xylanisolvens
Source name:
Bacterial Total RNA
Platform:
GPL21072
Series:
GSE155869
Download data
Sample
Accession:
GSM4714872
ID:
304714872

SRA Run Selector

15.

Bacteroides xylanisolvens D22 mucin O-linked glycans 2

Organism:
Bacteroides xylanisolvens
Source name:
Bacterial Total RNA
Platform:
GPL21072
Series:
GSE155869
Download data
Sample
Accession:
GSM4714871
ID:
304714871

SRA Run Selector

16.

Bacteroides xylanisolvens D22 mucin O-linked glycans 1

Organism:
Bacteroides xylanisolvens
Source name:
Bacterial Total RNA
Platform:
GPL21072
Series:
GSE155869
Download data
Sample
Accession:
GSM4714870
ID:
304714870

SRA Run Selector

17.

Bacteroides xylanisolvens D22 glucose 3

Organism:
Bacteroides xylanisolvens
Source name:
Bacterial Total RNA
Platform:
GPL21072
Series:
GSE155869
Download data
Sample
Accession:
GSM4714869
ID:
304714869

SRA Run Selector

18.

Bacteroides xylanisolvens D22 glucose 2

Organism:
Bacteroides xylanisolvens
Source name:
Bacterial Total RNA
Platform:
GPL21072
Series:
GSE155869
Download data
Sample
Accession:
GSM4714868
ID:
304714868

SRA Run Selector

19.

Bacteroides xylanisolvens D22 glucose 1

Organism:
Bacteroides xylanisolvens
Source name:
Bacterial Total RNA
Platform:
GPL21072
Series:
GSE155869
Download data
Sample
Accession:
GSM4714867
ID:
304714867

SRA Run Selector

20.

Bacteroides xylanisolvens 18002P Porphyran 2

Organism:
Bacteroides xylanisolvens
Source name:
Bacterial Total RNA
Platform:
GPL21072
Series:
GSE149357
Download data
Sample
Accession:
GSM4498566
ID:
304498566

SRA Run Selector

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