GPL13360[Accession] - GEO DataSets

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Select item 2001023471.

Expression data in Esherichia coli wild type and ∆dnaK

(Submitter supplied) We found that nemerous genes were up- or down regulated in ∆dnaK, including RpoS-regulated genes.

Organism:: Escherichia coli O157:H7 str. Sakai; Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
4 Samples

Download data: TXT

Series

Accession:: GSE102347

ID:: 200102347

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000943422.

Insights on Osmotic Tolerance Mechanisms in Escherichia coli Gained from an rpoC Mutation

(Submitter supplied) Transcriptional analysis of rpoC K370_A396dup mutants for tolerance to sodium chloride

Organism:: Escherichia coli O157:H7 str. Sakai; Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
8 Samples

Download data: GPR

Series

Accession:: GSE94342

ID:: 200094342

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2001023223.

E. coli BW25113 azide treated vs untreated cells

(Submitter supplied) Transcriptional profiling of mid-log phase (OD600 ~ 0.8) E. coli BW25113 cells grown treated with 2 mM NaN3 for 10 minutes

Organism:: Escherichia coli O157:H7 str. Sakai; Escherichia coli K-12; Escherichia coli CFT073; Escherichia coli str. K-12 substr. MG1655; Escherichia coli O157:H7 str. EDL933

Type:: Expression profiling by array

Platform:: GPL13360
2 Samples

Download data: TXT

Series

Accession:: GSE102322

ID:: 200102322

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Select item 2000863414.

LLQR E. coli ATCC 25922 vs wild-type E. coli ATCC 25922

(Submitter supplied) Global response to ciprofloxacin in low level quinolone resistant Escherichia coli: a shorter path to survival. Background: Bactericidal activity of quinolones in bacteria has been related to a combination of DNA fragmentation, ROS production and programmed dead cell systems. Subjacent molecular systems responsible for reduction of bactericidal effect in low-level quinolone resistance (LLQR) phenotypes remain to be clarified. more...

Organism:: Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli str. K-12 substr. MG1655; Escherichia coli ATCC 25922; Escherichia coli O157:H7 str. Sakai

Type:: Expression profiling by array

Platform:: GPL13360
8 Samples

Download data: TXT, XLSX

Series

Accession:: GSE86341

ID:: 200086341

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000737075.

Escherichia coli: untreated versus 5-azacytidine-treated expression profiles

(Submitter supplied) DNA microarray experiments were used to compare gene expression profiles of untreated and 5-azacytidine treated Escherichia coli at both logarithmic phase and early stationary phase The goal was to determine the effect of cytosine DNA methylation loss on gene expression (5-azacytidine is a methylation inhibitor)

Organism:: Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
10 Samples

Download data: TXT

Series

Accession:: GSE73707

ID:: 200073707

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Select item 2000858076.

Transcriptomic changes of Escherichia coli expressing BnTR1 at normal and heat stress conditions

(Submitter supplied) The heat shock response is critical for organisms to survive at a high temperature. Heterologous expression of eukaryotic molecular chaperons protects Escherichia coli against heat stress. Here we report that expression of the plant E3 ligase BnTR1 significantly increase the thermotolerance of Escherichia coli. Different from eukaryotic chaperones, BnTR1 post-transcriptionally regulates the heat shock factor σ32 though zinc fingers of the RING domain, which interacts with DnaK resulting in stabilizing σ32 and subsequently up-regulating heat shock proteins. more...

Organism:: Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
12 Samples

Download data: TXT

Series

Accession:: GSE85807

ID:: 200085807

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000692657.

Transcriptomic analysis of glycolaldehyde-treated wild type cells and a synthetic strain

(Submitter supplied) A synthetic pathway for (D)-xylose assimilation was stoichiometrically evaluated regarding its potential to produce selected value-added compounds and implemented in Escherichia coli strains. The pathway proceeds via the isomerization of (D)-xylose to (D)-xylulose, the phosphorylation of (D)-xylulose to obtain (D)-xylulose-1-phosphate (Xyl1P), and the aldolase cleavage of the latter to yield glycolaldehyde and DHAP. more...

Organism:: Escherichia coli O157:H7 str. Sakai; Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
9 Samples

Download data: TXT

Series

Accession:: GSE69265

ID:: 200069265

Select item 2000568338.

Expression profiling of EvgSc and ompR mutants

(Submitter supplied) In order to explore the transcriptional reprogramming in EvgSc, ompR and EvgSc/ompR mutants we have used whole genome microarray profiling.

Organism:: Escherichia coli O157:H7 str. EDL933; Escherichia coli str. K-12 substr. MG1655; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai

Type:: Expression profiling by array

Platform:: GPL13360
8 Samples

Download data: TXT

Series

Accession:: GSE56833

ID:: 200056833

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000381869.

Escherichia coli K-12: 0%, 10% and 30% hydrogen peroxide (H2O2) treatments, in wild type and luxS mutants

(Submitter supplied) Transcripitonal profiling of Escherichia coli K-12 W3110 comparing wild type and luxS mutants without or with 10%, 30% H2O2 treatments, two biological replicates for each condition

Organism:: Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia coli str. K-12 substr. MG1655; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai

Type:: Expression profiling by array

Platform:: GPL13360
6 Samples

Download data: TXT

Series

Accession:: GSE38186

ID:: 200038186

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Select item 20006699510.

Expression profiling of E. coli expressing the heterologous sigma70 factor (rpoD) of Lactobacillus plantarum

(Submitter supplied) Time course experiment to analyze transcriptional changes to the E. coli transcriptome due to overexpressing the heterologous sigma70 factor (RpoD) of Lactobacillus plantarum. A plasmid control strain (pControl) and the sigma70 overexpression strain (pLPLσ) were cultivated in parallel and after induction of RpoD expression samples for transcriptional profiling were taken in exponential, transition and stationary phase.

Organism:: Escherichia coli O157:H7 str. EDL933; Escherichia coli str. K-12 substr. MG1655; Escherichia coli; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai

Type:: Expression profiling by array

Platform:: GPL13360
12 Samples

Download data: TXT

Series

Accession:: GSE66995

ID:: 200066995

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003213111.

Escherichia coli K-12: 5% isooctane treatment at four time points

(Submitter supplied) Transcripitonal profiling of Escherichia coli K-12 BW25113 comparing cells with isooctane treatment at time point of 0, 10, 30 and 60 min with two biological replicates

Organism:: Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli K-12; Escherichia coli O157:H7 str. EDL933; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
4 Samples

Download data: TXT

Series

Accession:: GSE32131

ID:: 200032131

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Select item 20005451212.

Effect of NaCl concentration on the transcriptional network of E. coli in glucose minimal medium with glycine betaine

(Submitter supplied) The growth rate of E. coli decrease continuously with NaCl concentration, however the pattern for metabolic efficiency as measured by optical density is corralated to a change in pattern in transcription data and proteomics.The analysis of the data suggest that between 4.5 and 5% NaCl, the metabolism switched from aerobic to fermentative pathways. The response to osmotic stress is similar to a response to oxidative stress. more...

Organism:: Escherichia coli O157:H7 str. EDL933; Escherichia coli str. K-12 substr. MG1655; Escherichia coli K-12; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai

Type:: Expression profiling by array

Platform:: GPL13360
6 Samples

Download data: GPR

Series

Accession:: GSE54512

ID:: 200054512

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003818513.

Escherichia coli K-12: 1% hydrogen peroxide treatment under anaerobic condition

(Submitter supplied) Transcripitonal profiling of Escherichia coli K-12 W3110 comparing cells with and without hydrogen peroxide treatment, two biological replicates each

Organism:: Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655; Escherichia coli; Escherichia coli O157:H7 str. EDL933

Type:: Expression profiling by array

Platform:: GPL13360
2 Samples

Download data: TXT

Series

Accession:: GSE38185

ID:: 200038185

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Select item 20004461414.

Comparative transcriptomics of Escherichia coli growing in complex environments

(Submitter supplied) Long-term experiment (150 days) of Escherichia coli MC1000 with daily transfers into fresh LB medium and under three different oxygen regimes.

Organism:: Escherichia coli O157:H7 str. Sakai; Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
38 Samples

Download data: GPR

Series

Accession:: GSE44614

ID:: 200044614

Select item 20004220515.

Polyphenols from olive mill waste affect biofilm formation and motility in Escherichia coli K12

(Submitter supplied) Genome-wide transcriptional analysis was performed on E. coli K12 exposed to 1 mg/ml of olive vegetation water phenolic extract (OVWPE) in planktonic condition.

Organism:: Escherichia coli K-12; Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
27 Samples

Download data: TXT

Series

Accession:: GSE42205

ID:: 200042205

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20004055716.

Transcriptional analysis of E. coli whole genome during heat inactivation processes related to industrial cooking

(Submitter supplied) This study was conducted to determine the impact of extreme temperatures, aiming at controlling microorganisms by cooking, on the physiology and the transcriptome of Escherichia coli. ABSTRACT: Because the genome of Escherichia coli K12 is well understood, this organism was used as a model to investigate physiological and molecular changes during cell adaptation and survival to cooking temperatures used in the food industry. more...

Organism:: Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli O157:H7 str. EDL933; Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by array

Platform:: GPL13360
18 Samples

Download data: TXT

Series

Accession:: GSE40557

ID:: 200040557

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 10001336017.

Agilent-020097 E. coli Gene Expression Microarray (Feature Number version)

(Submitter supplied) E. coli (K12-MG1655, CFT073, O157-H7 EDL933, O157-H7 VT2-Sakai) Oligo Microarray Arrays of this design have barcodes that begin with 16020097 or 2520097. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. more...

Organism:: Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655

16 Series
1 Related Platform
174 Samples

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Platform

Accession:: GPL13360

ID:: 100013360

Select item 10001335918.

Agilent-020097 E. coli Gene Expression Microarray (Probe Name version)

(Submitter supplied) E. coli (K12-MG1655, CFT073, O157-H7 EDL933, O157-H7 VT2-Sakai) Oligo Microarray *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL13360. Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:: Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655