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Items: 17

1.

DksA controls the response of the Lyme disease spirochete Borrelia burgdorferi to starvation

(Submitter supplied) The pathogenic spirochete Borrelia burgdorferi senses and responds to diverse environmental challenges, including changes in nutrient availability, throughout its natural infectious cycle in Ixodes spp. ticks and mammalian hosts. This study examined the role of the putative DnaK suppressor protein (DksA) in the transcriptional response of B. burgdorferi to starvation. Wild-type and dksA-deficient B. more...
Organism:
Yersinia pestis; Borreliella burgdorferi; Chlamydia trachomatis; Staphylococcus aureus; Coxiella burnetii; Streptococcus pyogenes
Type:
Expression profiling by array
Platform:
GPL2129
12 Samples
Download data: CEL, CHP
Series
Accession:
GSE119023
ID:
200119023
2.

Genome-wide analysis of the regulatory function mediated by the small regulatory psm-mec RNA of methicillin-resistant Staphylococcus aureus

(Submitter supplied) Several methicillin resistance (SCCmec) clusters characteristic of hospital-associated methicillin-resistant Staphylococcus aureus (MRSA) strains harbor the psm-mec locus. In addition to encoding the cytolysin, phenol-soluble modulin (PSM) mec, this locus has been attributed gene regulatory functions. Here we employed genome-wide transcriptional profiling to define the regulatory function of the psm-mec locus. more...
Organism:
Borreliella burgdorferi; Chlamydia trachomatis; Yersinia pestis; Streptococcus pyogenes; Staphylococcus aureus; Coxiella burnetii
Type:
Expression profiling by array
Platform:
GPL2129
12 Samples
Download data: CEL, CHP
Series
Accession:
GSE51366
ID:
200051366
3.

Role of the PhoP-PhoQ Gene Regulatory System in Adaptation of Yersinia pestis to Environmental Stress in the Flea Digestive Tract

(Submitter supplied) The Yersinia pestis PhoPQ gene regulatory system is induced during infection of the flea digestive tract and is required to produce adherent biofilm in the foregut, which greatly enhances bacterial transmission during a flea bite. To understand the in vivo context of PhoPQ induction and to determine PhoP-regulated targets in the flea, we undertook whole genome comparative transcriptional profiling of Y. more...
Organism:
Coxiella burnetii; Chlamydia trachomatis; Streptococcus pyogenes; Borreliella burgdorferi; Staphylococcus aureus; Yersinia pestis
Type:
Expression profiling by array
Platform:
GPL2129
40 Samples
Download data: CEL, CHP
Series
Accession:
GSE61558
ID:
200061558
4.

Preadaptation of Yersinia pestis to resist mammalian innate immunity during transit through the flea vector

(Submitter supplied) Yersinia pestis, the agent of plague, is transmitted to mammals by infected fleas. Y. pestis exhibits a distinct life stage in the flea, where it grows in the form of a cohesive biofilm that promotes transmission. After transmission, the temperature shift to 37°C induces many known virulence factors of Y. pestis that confer resistance to innate immunity. These factors are not produced in the low-temperature environment of the flea, however, suggesting that Y. more...
Organism:
Yersinia pestis; Borreliella burgdorferi; Staphylococcus aureus; Coxiella burnetii; Chlamydia trachomatis; Streptococcus pyogenes
Type:
Expression profiling by array
Platform:
GPL2129
24 Samples
Download data: CEL, CHP
Series
Accession:
GSE16493
ID:
200016493
5.

Host cell-free growth of the Q fever bacterium Coxiella burnetii

(Submitter supplied) The inability to propagate obligate intracellular pathogens under axenic (host cell-free) culture conditions imposes severe experimental constraints that have negatively impacted progress in understanding pathogen virulence and disease mechanisms. Coxiella burnetii, the causative agent of human Q (Query) fever, is an obligate intracellular bacterial pathogen that replicates exclusively in an acidified, lysosome-like vacuole. more...
Organism:
Staphylococcus aureus; Yersinia pestis; Streptococcus pyogenes; Coxiella burnetii; Borreliella burgdorferi; Chlamydia trachomatis
Type:
Expression profiling by array
Platform:
GPL2129
9 Samples
Download data: CEL, CHP
Series
Accession:
GSE13338
ID:
200013338
6.

Transcriptomes of covR/S mutant strains of S. pyogenes

(Submitter supplied) Two covR mutant derivatives of parental strain MGAS2221 were recovered from mice experimentally infected with MGAS2221 and shown to differ in terms of the number and concentration of secreted proteins. One of the covR mutant strains had a secretion phenotype identical to a covS mutant strain, while the other had a secretion phenotype identical to a constructed covR mutant strain. To further investigate the potential differences between the two covR mutant strains we performed expression microarray analysis.
Organism:
Chlamydia trachomatis; Streptococcus pyogenes; Borreliella burgdorferi; Yersinia pestis; Staphylococcus aureus; Coxiella burnetii
Type:
Expression profiling by array
Platform:
GPL2129
4 Samples
Download data: CEL
Series
Accession:
GSE16436
ID:
200016436
7.

Determination of transcriptome of SptR in group A Streptococcus during growth in human saliva

(Submitter supplied) The molecular genetic mechanisms used by bacteria to persist in humans are poorly understood. Group A Streptococcus (GAS) causes the majority of bacterial pharyngitis cases in humans and is prone to persistently inhabit the upper respiratory tract. To gain information about how GAS survives in and infects the oropharynx, we analyzed the transcriptome of a serotype M1 strain grown in saliva. The dynamic pattern of changes in transcripts of genes [spy0874/0875, herein named sptR and sptS (sptR/S), for saliva persistence] encoding a two-component gene regulatory system of unknown function suggested that SptR/S contributed to persistence of GAS in saliva. more...
Organism:
Yersinia pestis; Streptococcus sp. 'group A'; Borreliella burgdorferi; Chlamydia trachomatis; Staphylococcus aureus; Coxiella burnetii; Streptococcus pyogenes
Type:
Expression profiling by array
Platform:
GPL2129
16 Samples
Download data: CEL
Series
Accession:
GSE16124
ID:
200016124
8.

Comparison of gene expression in MGAS315 and its isogenc mtsR mutant

(Submitter supplied) RATIONALE: mtsR is a regulator of genes involved in ion aquisition in S. pyogenes that has been suggested to be involved in development of invasive infections. We wanted to identify mtsR regulon. EXPERIMENT: We compared global gene expression in wild type strain MGAS315 with expression in its isogenc mtsR mutant. Experiment was performed with bacteria in exponential (EXP) and at late exponential phase (Late EXP) grown in THY medium Keywords: strain comparison
Organism:
Chlamydia trachomatis; Streptococcus pyogenes; Borreliella burgdorferi; Yersinia pestis; Staphylococcus aureus; Coxiella burnetii
Type:
Expression profiling by array
Platform:
GPL2129
12 Samples
Download data: CEL, CHP
Series
Accession:
GSE10252
ID:
200010252
9.

Genome-scale analysis of Staphylococcus aureus reveals host-specific diversification of the core genome.

(Submitter supplied) Staphylococcus aureus causes disease in humans and a wide array of animals. Of note, S. aureus mastitis of ruminants, including cows, sheep and goats, results in major economic losses worldwide. Extensive variation in genome content exists among S. aureus pathogenic clones. However, the genomic variation among S. aureus strains infecting different animal species has not been well examined. To investigate variation in the genome content of human and ruminant S. more...
Organism:
Borreliella burgdorferi; Chlamydia trachomatis; Coxiella burnetii; Yersinia pestis; Streptococcus pyogenes; Staphylococcus aureus
Type:
Genome variation profiling by array
Platform:
GPL2129
33 Samples
Download data: CEL, CHP
Series
Accession:
GSE10187
ID:
200010187
10.

Panton-Valentine Leukocidin Does Not Impact Virulence of Community-associated MRSA

(Submitter supplied) Panton-valentine leukocidin (PVL) has been linked to worldwide emergence of community-associated methicillin resistant Staphylococcus aureus (CA-MRSA) -- its role in virulence in unclear. Here we show that PVL had no effect on global gene expression of prominent CA-MRSA strains nor did it affect bacterial clearance from lungs, spleen and kidneys in a highly discriminatory rabbit bacteremia model. These findings negate a large body of epidemiological research that implicated PVL in CA-MRSA virulence. more...
Organism:
Coxiella burnetii; Rickettsia rickettsii; Staphylococcus aureus; Chlamydia muridarum; Staphylococcus epidermidis RP62A; Chlamydia caviae GPIC; Streptococcus pyogenes; Staphylococcus epidermidis ATCC 12228; Staphylococcus aureus subsp. aureus MW2; Borreliella burgdorferi; Yersinia pestis; Chlamydia pneumoniae AR39; Coxiella burnetii RSA 493; Granulibacter bethesdensis; Chlamydia trachomatis; Borreliella burgdorferi B31; Chlamydia trachomatis D/UW-3/CX; Staphylococcus haemolyticus JCSC1435
Type:
Expression profiling by array
Platforms:
GPL2129 GPL4692
30 Samples
Download data: CEL, CHP
Series
Accession:
GSE8677
ID:
200008677
11.

Global transcriptome analysis of B. burgdorferi during adherence and invasion of human neuroglial cells

(Submitter supplied) As adherence and entry of a pathogen into a host cell are two key components to an infection, identifying the molecular mechanisms responsible for cellular association will provide a better understanding of a microbe’s ability for pathogenesis. We previously established an in vitro model for B. burgdorferi invasion of human neuroglial cells. To expand on our earlier study, we performed B. burgdorferi whole-genome expression analysis following a 20-hour infection of human neuroglial cells to identify borrelial genes that were differentially regulated during cellular attachment and invasion as compared with cultured Borrelia in cell-free medium. more...
Organism:
Yersinia pestis; Coxiella burnetii; Streptococcus pyogenes; Borreliella burgdorferi; Chlamydia trachomatis; Staphylococcus aureus; Homo sapiens
Type:
Expression profiling by array
Platform:
GPL2129
9 Samples
Download data: CEL, CHP
Series
Accession:
GSE8219
ID:
200008219
12.

Comparison of Yersinia pestis from rat buboes and laboratory cultures

(Submitter supplied) Yersinia pestis causes bubonic plague in humans and rats. The disease is characterized by an enlarged, painful lymph node, termed a bubo, that develops following bacterial dissemination from an intradermal flea bite injection site. In susceptible animals, the bacteria quickly overcome host innate immune defenses in the lymph node, spread systemically through the blood, and produce fatal sepsis 1,2. At the terminal stage of disease, the bubo contains massive numbers of extracellular bacteria, necrotic lymphoid tissue, hemorrhage, and fibrin 2. The extreme virulence of Y. pestis has been largely ascribed to its ability to avoid innate immunity by preventing phagocytosis, selectively killing immune cells, and down regulating the proinflammatory response 3. Here we report that two innate immune effector mechanisms are generated during bubonic plague in the rat: iron limitation and nitrosative stress. The expression of nitric oxide synthase (iNOS) by rat polymorphonuclear neutrophils (PMNs) was induced in the bubo, and mutation of the Y. pestis hmp gene, which encodes a flavohemoglobin important for resistance to nitric oxide (NO), attenuated virulence. Thus, although Y. pestis avoids uptake and intracellular killing by phagocytes, it still encounters innate immune effector molecules, particularly phagocyte-derived reactive nitrogen species, in the extracellular environment of the bubo. Keywords: repeat
Organism:
Borreliella burgdorferi; Yersinia pestis; Staphylococcus aureus; Chlamydia trachomatis; Streptococcus pyogenes; Coxiella burnetii
Type:
Expression profiling by array
Platform:
GPL2129
30 Samples
Download data: CEL, DTT
Series
Accession:
GSE3793
ID:
200003793
13.

Expression comparison of GAS M3 strains MGAS315 & MGAS9887 in exponential growth

(Submitter supplied) Epidemiological data indicate that strains MGAS315 and MGAS9887 differ significantly in their capacity to cause necrotizing fasciitis infections. To probe the hypothesis that this difference was associated with differences in gene expression, an expression MA comparison of the strains in exponential phase growth in rich media was conducted. Keywords: strain comparison
Organism:
Coxiella burnetii; Streptococcus pyogenes; Yersinia pestis; Streptococcus sp. 'group A'; Borreliella burgdorferi; Chlamydia trachomatis; Staphylococcus aureus
Type:
Expression profiling by array
Dataset:
GDS2353
Platform:
GPL2129
12 Samples
Download data: CEL, EXP
Series
Accession:
GSE3966
ID:
200003966
14.

GAS gene expression from clinical samples

(Submitter supplied) GAS strains were grown in THY broth to early exponential phase and RNA extracted. Targets from two biological replicates of each were generated and the expression profiles were determined using the RMLgenechip. Comparisons between the sample groups allow the identification of genes differentially expressed between strains. Keywords: repeat
Organism:
Coxiella burnetii; Chlamydia trachomatis; Streptococcus pyogenes; Yersinia pestis; Borreliella burgdorferi; Staphylococcus aureus
Type:
Expression profiling by array
Dataset:
GDS2349
Platform:
GPL2129
18 Samples
Download data: CEL
Series
Accession:
GSE3900
ID:
200003900
15.

GAS gene expression from mouse-passaged and clinical GAS strains

(Submitter supplied) GAS strains were grown in THY broth to early exponential phase and RNA extracted. cDNA was generated and the expression profiles were determined using the RMLgenechip. Comparisons between the sample groups allow the identification of genes differentially expressed between strains. This experiment compared pre- and post- mouse passaged GAS strains. Keywords: GAS comparison
Organism:
Coxiella burnetii; Streptococcus pyogenes; Yersinia pestis; Borreliella burgdorferi; Chlamydia trachomatis; Staphylococcus aureus
Type:
Expression profiling by array
Platform:
GPL2129
30 Samples
Download data: CEL
Series
Accession:
GSE3899
ID:
200003899
16.

S. aureus gene expression during growth phase and/or S. aureus–PMN interaction

(Submitter supplied) To measure S. aureus gene expression during growth phase and/or S. aureus–PMN interaction. Keywords: other
Organism:
Coxiella burnetii; Staphylococcus aureus; Chlamydia trachomatis; Streptococcus pyogenes; Borreliella burgdorferi; Yersinia pestis
Type:
Expression profiling by array
Platform:
GPL2129
159 Samples
Download data
Series
Accession:
GSE2728
ID:
200002728
17.

Longitudinal analysis of the group A Streptococcus transcriptome

(Submitter supplied) Identification of the genetic events that contribute to host-pathogen interactions is important for understanding the natural history of infectious diseases and developing therapeutics. Transcriptome studies conducted on pathogens have been central to this goal in recent years. However, most of these investigations have focused on specific end points or disease phases, rather than analysis of the entire time course of infection. more...
Organism:
Coxiella burnetii; Streptococcus pyogenes; Borreliella burgdorferi; Chlamydia trachomatis; Staphylococcus aureus; Yersinia pestis; Macaca fascicularis
Type:
Expression profiling by array
Platform:
GPL2129
259 Samples
Download data: CEL, EXP, TXT
Series
Accession:
GSE2713
ID:
200002713
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