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Items: 1 to 20 of 35

1.

Transposon sequencing for pathway-specific unipolar polysaccharide biosynthesis screen in Agrobacterium tumefaciens C58

(Submitter supplied) Performed en masse sequencing of transposon insertions among A. tumefaciens mutants deficient in unipolar polysaccharide (UPP) production in two different genetic backgrounds, each one specific for one of the two chemical species of UPP (UPPGlcN and UPPGalN)
Organism:
Agrobacterium fabrum str. C58
Type:
Other
Platform:
GPL30075
5 Samples
Download data: TSV
Series
Accession:
GSE173827
ID:
200173827

SRA Run Selector

2.

RNASeq Analysis of MirA Regulator in Agrobacterium tumefaciens C58

(Submitter supplied) Performed RNASeq analysis comparing A. tumefaciens C58 (fabrum) harboring a plasmid driving ectopic expression of mirA regulator gene (ATU_RS08050) from Plac promoter with the isogenic strain haboring the same plasmid with no mirA (Vector control)
Organism:
Agrobacterium fabrum str. C58
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30075
6 Samples
Download data: TXT
Series
Accession:
GSE174467
ID:
200174467

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Decreased Peptidoglycan Synthesis Induces the RSI Invasion Switch in Agrobacterium tumefaciens

(Submitter supplied) We report that depletion of PBP1a in Agrobacterium tumefaciens induces transcriptional changes remarkably similar to the RSI invasion switch. Using RNA-seq with NextSeq 500 sequencing, we identified genes that are differentially expressed during depletion of PBP1a after 6 hours and after 16 hours. Depletion of PBP1a after 6 hours results in upregulation in genes associated with Type VI Secretion and succinoglycan production and downregulation of genes associated with flagellar motility and chemotaxis. more...
Organism:
Agrobacterium fabrum str. C58
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30075
20 Samples
Download data: XLSX
Series
Accession:
GSE173921
ID:
200173921

SRA Run Selector

4.

Illumina NextSeq 500 (Agrobacterium fabrum str. C58)

Organism:
Agrobacterium fabrum str. C58
3 Series
31 Samples
Download data
Platform
Accession:
GPL30075
ID:
100030075

5.

UPP Pathway Specific Mutants 3_S61

Organism:
Agrobacterium fabrum str. C58
Source name:
Pooled G-DNA from cells in colonies
Platform:
GPL30075
Series:
GSE173827
Download data: TSV
Sample
Accession:
GSM5280867
ID:
305280867

SRA Run Selector

6.

UPP Pathway Specific Mutants 3_S60

Organism:
Agrobacterium fabrum str. C58
Source name:
Pooled G-DNA from cells in colonies
Platform:
GPL30075
Series:
GSE173827
Download data: TSV
Sample
Accession:
GSM5280866
ID:
305280866

SRA Run Selector

7.

UPP Pathway Specific Mutants 2_S73

Organism:
Agrobacterium fabrum str. C58
Source name:
Pooled G-DNA from cells in colonies
Platform:
GPL30075
Series:
GSE173827
Download data: TSV
Sample
Accession:
GSM5280865
ID:
305280865

SRA Run Selector

8.

UPP Pathway Specific Mutants 1_S94

Organism:
Agrobacterium fabrum str. C58
Source name:
Pooled G-DNA from cells in colonies
Platform:
GPL30075
Series:
GSE173827
Download data: TSV
Sample
Accession:
GSM5280864
ID:
305280864

SRA Run Selector

9.

UPP Pathway Specific Mutants 1_S93

Organism:
Agrobacterium fabrum str. C58
Source name:
Pooled G-DNA from cells in colonies
Platform:
GPL30075
Series:
GSE173827
Download data: TSV
Sample
Accession:
GSM5280863
ID:
305280863

SRA Run Selector

10.

pSRKc

Organism:
Agrobacterium fabrum str. C58
Source name:
Vector Control
Platform:
GPL30075
Series:
GSE174467
Download data: TXT
Sample
Accession:
GSM5311886
ID:
305311886

SRA Run Selector

11.

pSRKb

Organism:
Agrobacterium fabrum str. C58
Source name:
Vector Control
Platform:
GPL30075
Series:
GSE174467
Download data: TXT
Sample
Accession:
GSM5311885
ID:
305311885

SRA Run Selector

12.

pSRKa

Organism:
Agrobacterium fabrum str. C58
Source name:
Vector Control
Platform:
GPL30075
Series:
GSE174467
Download data: TXT
Sample
Accession:
GSM5311884
ID:
305311884

SRA Run Selector

13.

mirAc

Organism:
Agrobacterium fabrum str. C58
Source name:
MirA Expression - Plasmid-borne ectopic
Platform:
GPL30075
Series:
GSE174467
Download data: TXT
Sample
Accession:
GSM5311883
ID:
305311883

SRA Run Selector

14.

mirAb

Organism:
Agrobacterium fabrum str. C58
Source name:
MirA Expression - Plasmid-borne ectopic
Platform:
GPL30075
Series:
GSE174467
Download data: TXT
Sample
Accession:
GSM5311882
ID:
305311882

SRA Run Selector

15.

mirAa

Organism:
Agrobacterium fabrum str. C58
Source name:
MirA Expression - Plasmid-borne ectopic
Platform:
GPL30075
Series:
GSE174467
Download data: TXT
Sample
Accession:
GSM5311881
ID:
305311881

SRA Run Selector

16.

PBP1a 16-Hour Depletion rep 4

Organism:
Agrobacterium fabrum str. C58
Source name:
Bacterial cells
Platform:
GPL30075
Series:
GSE173921
Download data
Sample
Accession:
GSM5282965
ID:
305282965

SRA Run Selector

17.

PBP1a 16-Hour Depletion rep 3

Organism:
Agrobacterium fabrum str. C58
Source name:
Bacterial cells
Platform:
GPL30075
Series:
GSE173921
Download data
Sample
Accession:
GSM5282964
ID:
305282964

SRA Run Selector

18.

PBP1a 16-Hour Depletion rep 2

Organism:
Agrobacterium fabrum str. C58
Source name:
Bacterial cells
Platform:
GPL30075
Series:
GSE173921
Download data
Sample
Accession:
GSM5282963
ID:
305282963

SRA Run Selector

19.

PBP1a 16-Hour Depletion rep 1

Organism:
Agrobacterium fabrum str. C58
Source name:
Bacterial cells
Platform:
GPL30075
Series:
GSE173921
Download data
Sample
Accession:
GSM5282962
ID:
305282962

SRA Run Selector

20.

PBP1a 6-Hour Depletion rep 4

Organism:
Agrobacterium fabrum str. C58
Source name:
Bacterial cells
Platform:
GPL30075
Series:
GSE173921
Download data
Sample
Accession:
GSM5282961
ID:
305282961

SRA Run Selector

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