GPL33685[RGSE] - GEO DataSets

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Items: 2

Select item 2002409101.

Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [ATAC-Seq]

(Submitter supplied) The PIWI-interacting RNA (piRNA) pathway plays a crucial role in preventing endogenous genomic parasites, transposable elements (TEs), from damaging the genetic material of animal gonadal cells. Specific regions in the genome, called piRNA clusters, define each species’ piRNA repertoire and therefore its capacity to recognize and silence transposons. In the somatic cells of the Drosophila melanogaster ovary, the flamenco (flam) unistrand cluster is the main source of piRNAs and primarily regulates Gypsy family TEs that are able to form virus-like particles and infect neighbouring germ cells. more...

Organism:: Drosophila melanogaster; Drosophila pseudoobscura; Drosophila yakuba; Drosophila persimilis; Drosophila ficusphila; Drosophila erecta; Drosophila simulans; Drosophila suzukii; Drosophila biarmipes

Type:: Genome binding/occupancy profiling by high throughput sequencing

9 related Platforms
18 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE240910

ID:: 200240910

PubMed Full text in PMC Similar studies

Select item 2002258892.

Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Drosophila erecta; Drosophila pseudoobscura; Drosophila ficusphila; Drosophila ananassae; Drosophila subobscura; Drosophila virilis; Drosophila biarmipes; Drosophila melanogaster; Drosophila simulans; Drosophila yakuba; Drosophila suzukii; Drosophila mojavensis; Drosophila persimilis; Drosophila azteca; Drosophila takahashii

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing