GPL5113[RGSE] - GEO DataSets

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Items: 4

Select item 2000235781.

Cyanide response in Escherichia coli

(Submitter supplied) The goal was to ascertain the impact of cyanide treatment on E. coli's transcriptome.

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL5113
8 Samples

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Series

Accession:: GSE23578

ID:: 200023578

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Select item 2000134442.

Identification of isobutanol response network of E. coli

(Submitter supplied) Isobutanol has emerged as a potential biofuel due to recent metabolic engineering efforts. Here we used gene expression and transcription factor(TF)-gene interaction data, genetic knockouts, and Network Component Analysis (NCA) to map the isobutanol response network of Escherichia coli under aerobic conditions. A transcriptional response network consisting of 2004 genes/TFs and 2600 interactions was identified. more...

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL5113
66 Samples

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Series

Accession:: GSE13444

ID:: 200013444

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000085403.

Identification of GSNO response network in E. coli

(Submitter supplied) This project used transcriptomic analysis of the S-nitrosoglutathione (GSNO) response in E. coli, and associated regulatory mutants, to identified the molecular targets of and response to GSNO during aerobic growth in minimal media. Keywords: Comparative genomic response

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL5113
40 Samples

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Series

Accession:: GSE8540

ID:: 200008540

Select item 2000075734.

Identification of NO Response Network in E. coli

(Submitter supplied) The goals of this project were: to use transcriptomics as a starting point for reverse engineering the NO response network of E. coli, and to identify the targets responsible for NO-induced bacteriostasis. The data is associated with Hyduke DR*, Jarboe LR*, Tran LM, Chou KJY, Liao JC 2007 "Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli. more...