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Items: 1 to 20 of 21

1.

Operon complexity in Rhodobacter capsulatus revealed by integration of dRNA-seq and RNA-seq data

(Submitter supplied) We report a complex operon architecture for R. capsulatus: operons with multiple TSSs and TTSs, genomic regions of high transcriptional activity and novel transcripts. In addition, we present a new 5' and 3' targeted sequencing method for the Ion Torrent PGM. TEX+ and TEX- indicates if the dRNA-seq library was treated with Terminator 5'-Phosphate-Dependent Exonuclease or not. Treatment with TEX degrades every RNA that does not have a 5'-PPP.
Organism:
Rhodobacter capsulatus SB 1003; Rhodobacter capsulatus DE442
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL25365 GPL25364
18 Samples
Download data: BED
Series
Accession:
GSE117537
ID:
200117537

SRA Run Selector

2.

Ion Torrent PGM (Rhodobacter capsulatus SB 1003)

Organism:
Rhodobacter capsulatus SB 1003
1 Series
9 Samples
Download data
Platform
Accession:
GPL25365
ID:
100025365

3.

Ion Torrent PGM (Rhodobacter capsulatus DE442)

Organism:
Rhodobacter capsulatus DE442
1 Series
9 Samples
Download data
Platform
Accession:
GPL25364
ID:
100025364

4.

PGM-134: SB1003_totalRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 total RNA
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302744
ID:
303302744

SRA Run Selector

5.

PGM-108: SB1003_TEXplus_3prime_dRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 TEX+ 3'
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302742
ID:
303302742

SRA Run Selector

6.

PGM-109: SB1003_TEXminus_3prime_dRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 TEX- 3'
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302741
ID:
303302741

SRA Run Selector

7.

PGM-106: SB1003_TEXplus_3prime_dRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 TEX+ 3'
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302740
ID:
303302740

SRA Run Selector

8.

PGM-107: SB1003_TEXminus_3prime_dRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 TEX- 3'
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302739
ID:
303302739

SRA Run Selector

9.

PGM-104: SB1003_TEXplus_5prime_dRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 TEX+ 5'
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302738
ID:
303302738

SRA Run Selector

10.

PGM-105: SB1003_TEXminus_5prime_dRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 TEX- 5'
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302737
ID:
303302737

SRA Run Selector

11.

PGM-96: SB1003_TEXplus_5prime_dRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 TEX+ 5'
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302736
ID:
303302736

SRA Run Selector

12.

PGM-95: SB1003_TEXminus_5prime_dRNA-seq

Organism:
Rhodobacter capsulatus SB 1003
Source name:
SB1003 TEX- 5'
Platform:
GPL25365
Series:
GSE117537
Download data
Sample
Accession:
GSM3302735
ID:
303302735

SRA Run Selector

13.

PGM-135: DE442_totalRNA-seq

Organism:
Rhodobacter capsulatus DE442
Source name:
DE442 total RNA
Platform:
GPL25364
Series:
GSE117537
Download data
Sample
Accession:
GSM3302743
ID:
303302743

SRA Run Selector

14.

PGM-117: DE442_TEXplus_3prime_dRNA-seq

Organism:
Rhodobacter capsulatus DE442
Source name:
DE442 TEX+ 3'
Platform:
GPL25364
Series:
GSE117537
Download data
Sample
Accession:
GSM3302734
ID:
303302734

SRA Run Selector

15.

PGM-118: DE442_TEXminus_3prime_dRNA-seq

Organism:
Rhodobacter capsulatus DE442
Source name:
DE442 TEX- 3'
Platform:
GPL25364
Series:
GSE117537
Download data
Sample
Accession:
GSM3302733
ID:
303302733

SRA Run Selector

16.

PGM-120: DE442_TEXplus_3prime_dRNA-seq

Organism:
Rhodobacter capsulatus DE442
Source name:
DE442 TEX+ 3'
Platform:
GPL25364
Series:
GSE117537
Download data
Sample
Accession:
GSM3302732
ID:
303302732

SRA Run Selector

17.

PGM-121: DE442_TEXminus_3prime_dRNA-seq

Organism:
Rhodobacter capsulatus DE442
Source name:
DE442 TEX- 3'
Platform:
GPL25364
Series:
GSE117537
Download data
Sample
Accession:
GSM3302731
ID:
303302731

SRA Run Selector

18.

PGM-111: DE442_TEXplus_5prime_dRNA-seq

Organism:
Rhodobacter capsulatus DE442
Source name:
DE442 TEX+ 5'
Platform:
GPL25364
Series:
GSE117537
Download data
Sample
Accession:
GSM3302730
ID:
303302730

SRA Run Selector

19.

PGM-112: DE442_TEXminus_5prime_dRNA-seq

Organism:
Rhodobacter capsulatus DE442
Source name:
DE442 TEX- 5'
Platform:
GPL25364
Series:
GSE117537
Download data
Sample
Accession:
GSM3302729
ID:
303302729

SRA Run Selector

20.

PGM-101: DE442_TEXplus_5prime_dRNA-seq

Organism:
Rhodobacter capsulatus DE442
Source name:
DE442 TEX+ 5'
Platform:
GPL25364
Series:
GSE117537
Download data
Sample
Accession:
GSM3302728
ID:
303302728

SRA Run Selector

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