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Items: 1 to 20 of 29

1.

MULTI-seq: Universal sample multiplexing for single-cell RNA sequencing using lipid-tagged indices

(Submitter supplied) We report the development of MULTI-seq: a scRNA-seq and snRNA-seq sample multiplexing approach using lipid- or cholesterol-modified oligonucleotides. We demonstrate MULTI-seq utility in the following scRNA-seq and snRNA-seq contexts: (1) Live HEKs and HMECs with and without stimulation with TGF-β, (2) Purified nuclei from HEKs, MEFs, and Jurkats stimulated for 0-24 hrs with ionomycin and PMA, (3) 96 unique HMEC cultures (with one technical replicate), and (4) human metastases and mouse immune cells isolated from cryopreserved primary tissue samples dissected from a patient-derived xenograft mouse model of triple-negative breast cancer at progressive stages of metastasis to the lung.
Organism:
Mus musculus; Homo sapiens
Type:
Expression profiling by high throughput sequencing
4 related Platforms
24 Samples
Download data: MTX
Series
Accession:
GSE129578
ID:
200129578

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NovaSeq 6000 (Homo sapiens; Mus musculus)

Organism:
Homo sapiens; Mus musculus
107 Series
670 Samples
Download data
Platform
Accession:
GPL25526
ID:
100025526

3.

Illumina HiSeq 4000 (Homo sapiens; Mus musculus)

Organism:
Homo sapiens; Mus musculus
29 Series
215 Samples
Download data
Platform
Accession:
GPL25431
ID:
100025431

4.

Illumina NovaSeq 6000 (Homo sapiens)

Organism:
Homo sapiens
17287 Series
937751 Samples
Download data
Platform
Accession:
GPL24676
ID:
100024676

5.

Illumina HiSeq 4000 (Homo sapiens)

Organism:
Homo sapiens
8517 Series
195568 Samples
Download data
Platform
Accession:
GPL20301
ID:
100020301

6.

PDX_MULTI

Organism:
Mus musculus; Homo sapiens
Source name:
PDX
Platform:
GPL25526
Series:
GSE129578
Download data
Sample
Accession:
GSM3716632
ID:
303716632

SRA Run Selector

7.

PDX_human and mouse

Organism:
Homo sapiens; Mus musculus
Source name:
PDX
Platform:
GPL25526
Series:
GSE129578
Download data
Sample
Accession:
GSM3716621
ID:
303716621

SRA Run Selector

8.

POC_snRNAseq_Lane2

Organism:
Homo sapiens; Mus musculus
Source name:
HEK_MEF_Jurkat
Platform:
GPL25526
Series:
GSE129578
Download data
Sample
Accession:
GSM3716613
ID:
303716613

SRA Run Selector

9.

POC_snRNAseq_Lane1

Organism:
Homo sapiens; Mus musculus
Source name:
HEK_MEF_Jurkat
Platform:
GPL25526
Series:
GSE129578
Download data
Sample
Accession:
GSM3716612
ID:
303716612

SRA Run Selector

10.

POC_snRNAseq_Lane1_MULTI

Organism:
Homo sapiens; Mus musculus
Source name:
HEK_MEF_Jurkat
Platform:
GPL25431
Series:
GSE129578
Download data
Sample
Accession:
GSM3716624
ID:
303716624

SRA Run Selector

11.

96plexHMEC_tech.rep_Lane4_MULTI

Organism:
Homo sapiens
Source name:
HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716631
ID:
303716631

SRA Run Selector

12.

96plexHMEC_tech.rep_Lane3_MULTI

Organism:
Homo sapiens
Source name:
HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716630
ID:
303716630

SRA Run Selector

13.

96plexHMEC_tech.rep_Lane2_MULTI

Organism:
Homo sapiens
Source name:
HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716629
ID:
303716629

SRA Run Selector

14.

96plexHMEC_tech.rep_Lane1_MULTI

Organism:
Homo sapiens
Source name:
HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716628
ID:
303716628

SRA Run Selector

15.

96plexHMEC_original_Lane3_MULTI

Organism:
Homo sapiens
Source name:
HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716627
ID:
303716627

SRA Run Selector

16.

96plexHMEC_original_Lane2_MULTI

Organism:
Homo sapiens
Source name:
HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716626
ID:
303716626

SRA Run Selector

17.

96plexHMEC_original_Lane1_MULTI

Organism:
Homo sapiens
Source name:
HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716625
ID:
303716625

SRA Run Selector

18.

POC_scRNAseq_CMO_MULTI

Organism:
Homo sapiens
Source name:
HEK_HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716623
ID:
303716623

SRA Run Selector

19.

POC_scRNAseq_LMO_MULTI

Organism:
Homo sapiens
Source name:
HEK_HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716622
ID:
303716622

SRA Run Selector

20.

POC_scRNAseq_UNLABELED

Organism:
Homo sapiens
Source name:
HEK_HMEC
Platform:
GPL20301
Series:
GSE129578
Download data
Sample
Accession:
GSM3716611
ID:
303716611

SRA Run Selector

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db=gds|term=GSE129578[Accession]|query=1|qty=3|blobid=MCID_6748f0be462e1a751e153b8a|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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