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Items: 16

1.

SREBF1 coordinates with master transcription factors in regulating lipid metabolism and cancer-promoting pathways in squamous cell carcinoma

(Submitter supplied) We profiled esophageal squamous cell carcinorma (ESCC) cell lines with chromatin immunoprecipitation sequencing (ChIP-Seq). Mathematically modeling was performed to establish (super)-enhancers landscapes and inter-connected transcriptional circuitry formed by master TFs. Coregulation and cooperation between master TFs was investigated by ChIP-Seq, RNASeq, 4C-Seq and luciferase assay. Biological functions of candidate factors were evaluated by measuring cell proliferation, colony formation, cell apoptosis and xenograft growth. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL10999 GPL22790
13 Samples
Download data: BW, NARROWPEAK, TXT
Series
Accession:
GSE143803
ID:
200143803

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina MiniSeq (Homo sapiens)

Organism:
Homo sapiens
86 Series
959 Samples
Download data
Platform
Accession:
GPL22790
ID:
100022790

3.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:
Homo sapiens
1102 Series
10066 Samples
Download data
Platform
Accession:
GPL10999
ID:
100010999

4.

TE5_KLF5 ChIP-Seq

Organism:
Homo sapiens
Source name:
TE5_KLF5 ChIP-Seq
Platform:
GPL10999
Series:
GSE143803
Download data: BW, NARROWPEAK
Sample
Accession:
GSM4274815
ID:
304274815

SRA Run Selector

5.

TE5_siNC2 RNA-Seq

Organism:
Homo sapiens
Source name:
TE5_siNC2 RNA-Seq
Platform:
GPL10999
Series:
GSE143803
Download data
Sample
Accession:
GSM4274814
ID:
304274814

SRA Run Selector

6.

TE5_siNC1 RNA-Seq

Organism:
Homo sapiens
Source name:
TE5_siNC1 RNA-Seq
Platform:
GPL10999
Series:
GSE143803
Download data
Sample
Accession:
GSM4274813
ID:
304274813

SRA Run Selector

7.

TE5_siSREBF1_2 RNA-Seq

Organism:
Homo sapiens
Source name:
TE5_siSREBF1_2 RNA-Seq
Platform:
GPL10999
Series:
GSE143803
Download data
Sample
Accession:
GSM4274812
ID:
304274812

SRA Run Selector

8.

TE5_siSREBF1_1 RNA-Seq

Organism:
Homo sapiens
Source name:
TE5_siSREBF1_1 RNA-Seq
Platform:
GPL10999
Series:
GSE143803
Download data
Sample
Accession:
GSM4274811
ID:
304274811

SRA Run Selector

9.

TE5_input ChIP-Seq

Organism:
Homo sapiens
Source name:
TE5_input ChIP-Seq
Platform:
GPL10999
Series:
GSE143803
Download data
Sample
Accession:
GSM4274806
ID:
304274806

SRA Run Selector

10.

TE5_SREBF1 ChIP-Seq

Organism:
Homo sapiens
Source name:
TE5_SREBF1 ChIP-Seq
Platform:
GPL10999
Series:
GSE143803
Download data: BW, NARROWPEAK
Sample
Accession:
GSM4274805
ID:
304274805

SRA Run Selector

11.

KYSE150_input ChIP-Seq

Organism:
Homo sapiens
Source name:
KYSE150_input ChIP-Seq
Platform:
GPL10999
Series:
GSE143803
Download data
Sample
Accession:
GSM4274804
ID:
304274804

SRA Run Selector

12.

KYSE150_SREBF1 ChIP-Seq

Organism:
Homo sapiens
Source name:
KYSE150_SREBF1 ChIP-Seq
Platform:
GPL10999
Series:
GSE143803
Download data: BW, NARROWPEAK
Sample
Accession:
GSM4274803
ID:
304274803

SRA Run Selector

13.

KYSE150_siNC2 RNA-Seq

Organism:
Homo sapiens
Source name:
KYSE150_siNC2 RNA-Seq
Platform:
GPL22790
Series:
GSE143803
Download data
Sample
Accession:
GSM4274810
ID:
304274810

SRA Run Selector

14.

KYSE150_siNC1 RNA-Seq

Organism:
Homo sapiens
Source name:
KYSE150_siNC1 RNA-Seq
Platform:
GPL22790
Series:
GSE143803
Download data
Sample
Accession:
GSM4274809
ID:
304274809

SRA Run Selector

15.

KYSE150_siSREBF1_2 RNA-Seq

Organism:
Homo sapiens
Source name:
KYSE150_siSREBF1_2 RNA-Seq
Platform:
GPL22790
Series:
GSE143803
Download data
Sample
Accession:
GSM4274808
ID:
304274808

SRA Run Selector

16.

KYSE150_siSREBF1_1 RNA-Seq

Organism:
Homo sapiens
Source name:
KYSE150_siSREBF1_1 RNA-Seq
Platform:
GPL22790
Series:
GSE143803
Download data
Sample
Accession:
GSM4274807
ID:
304274807

SRA Run Selector

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