GSE155677[Accession] - GEO DataSets - NCBI

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Select item 2001556771.

Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler

(Submitter supplied) How multiple epigenetic layers and transcription factors (TFs) interact to facilitate brain development is largely unknown. Here, we combined single-cell RNA-seq and single-cell ATAC-seq with cell-type-specific measurements of enhancer activity, DNA methylation and three-dimensional genome architecture to systematically map the regulatory landscape of neural differentiation in the mouse neocortex in vivo. more...

Organism:: Escherichia coli; Mus musculus

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other

Platforms:: GPL24247 GPL25368
36 Samples

Download data: BED, BEDGRAPH, BW, FA, MTX, PICKLE, TAR, TSV, TXT

Series

Accession:: GSE155677

ID:: 200155677

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000253682.

Illumina NovaSeq 6000 (Escherichia coli)

Organism:: Escherichia coli

72 Series
1000 Samples

Platform

Accession:: GPL25368

ID:: 100025368

Select item 1000242473.

Illumina NovaSeq 6000 (Mus musculus)

Organism:: Mus musculus

14540 Series
700496 Samples

Platform

Accession:: GPL24247

ID:: 100024247

Select item 3055837274.

ImmunoMPRA E15.5 TUBB3+ rep2

Organism:: Mus musculus

Source name:: Electroporated Tubb3+ from E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Sample

Accession:: GSM5583727

ID:: 305583727

SRA Run Selector

Select item 3055837265.

ImmunoMPRA E15.5 TUBB3+ rep1

Organism:: Mus musculus

Source name:: Electroporated Tubb3+ from E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TAR

Sample

Accession:: GSM5583726

ID:: 305583726

SRA Run Selector

Select item 3055837256.

ImmunoMPRA E15.5 Eomes+ rep2

Organism:: Mus musculus

Source name:: Electroporated Eomes+ from E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Sample

Accession:: GSM5583725

ID:: 305583725

SRA Run Selector

Select item 3055837247.

ImmunoMPRA E15.5 Eomes+ rep1

Organism:: Mus musculus

Source name:: Electroporated Eomes+ from E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TAR

Sample

Accession:: GSM5583724

ID:: 305583724

SRA Run Selector

Select item 3055837238.

ImmunoMPRA E15.5 Pax6+ rep2

Organism:: Mus musculus

Source name:: Electroporated Pax6+ from E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Sample

Accession:: GSM5583723

ID:: 305583723

SRA Run Selector

Select item 3055837229.

ImmunoMPRA E15.5 Pax6+ rep1

Organism:: Mus musculus

Source name:: Electroporated Pax6+ from E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TAR

Sample

Accession:: GSM5583722

ID:: 305583722

SRA Run Selector

Select item 30558372110.

MPRA E15.5 rep2

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Sample

Accession:: GSM5583721

ID:: 305583721

SRA Run Selector

Select item 30558372011.

MPRA E15.5 rep1

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TAR

Sample

Accession:: GSM5583720

ID:: 305583720

SRA Run Selector

Select item 30558371812.

RNA-seq of Nng2 overexpressing cells rep2

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TXT

Sample

Accession:: GSM5583718

ID:: 305583718

SRA Run Selector

Select item 30558371713.

RNA-seq of Nng2 overexpressing cells rep1

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TXT

Sample

Accession:: GSM5583717

ID:: 305583717

SRA Run Selector

Select item 30558371614.

NOME-seq of Nng2 overexpressing cells rep2

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: BW

Sample

Accession:: GSM5583716

ID:: 305583716

SRA Run Selector

Select item 30558371515.

NOME-seq of Nng2 overexpressing cells rep1

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: BW

Sample

Accession:: GSM5583715

ID:: 305583715

SRA Run Selector

Select item 30558371416.

HiC of Nng2 overexpressing cells rep3

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TXT

Sample

Accession:: GSM5583714

ID:: 305583714

SRA Run Selector

Select item 30558371317.

HiC of Nng2 overexpressing cells rep2

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TXT

Sample

Accession:: GSM5583713

ID:: 305583713

SRA Run Selector

Select item 30558371218.

HiC of Nng2 overexpressing cells rep1

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TXT

Sample

Accession:: GSM5583712

ID:: 305583712

SRA Run Selector

Select item 30558371119.

RNA-seq of GFP overexpressing cells rep2

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TXT

Sample

Accession:: GSM5583711

ID:: 305583711

SRA Run Selector

Select item 30558371020.

RNA-seq of GFP overexpressing cells rep1

Organism:: Mus musculus

Source name:: Electroporated cells E15.5 somatosensory cortex

Platform:: GPL24247
Series:: GSE155677

Download data: TXT

Sample

Accession:: GSM5583710

ID:: 305583710

SRA Run Selector

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