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Items: 15

1.

SHARC-seq: High throughput in vivo determination of 3D RNA structures and dynamics

(Submitter supplied) RNA molecules not only carry genetic information like DNA, but also folds into exquisite 3D structures like proteins. Despite strong interests in RNA biology and their medical applications, RNA structure determination in vivo remained a long-standing problem. Here we developed a new technology to directly determine RNA structures in vivo, termed SHARC-seq. Applying SHARC-seq, spatial distances among nucleotides can be measured and used to rebuild in vivo RNA 3D structure and dynamics.
Organism:
synthetic construct; Homo sapiens
Type:
Other
Platforms:
GPL24676 GPL17769
12 Samples
Download data: BEDPE, TXT
Series
Accession:
GSE167812
ID:
200167812
2.

Illumina NovaSeq 6000 (Homo sapiens)

Platform
Accession:
GPL24676
ID:
100024676
3.

Illumina MiSeq (synthetic construct)

Organism:
synthetic construct
102 Series
1233 Samples
Download data
Platform
Accession:
GPL17769
ID:
100017769
4.

HeLa_25mM_RNaseR24h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112825
ID:
305112825
5.

HeLa_25mM_RNaseR2h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112824
ID:
305112824
6.

HeLa_25mM_RNaseR0h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112823
ID:
305112823
7.

HeLa_12.5mM_RNaseR24h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112822
ID:
305112822
8.

HeLa_12.5mM_RNaseR12h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112821
ID:
305112821
9.

HeLa_12.5mM_RNaseR2h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112820
ID:
305112820
10.

HeLa_12.5mM_RNaseR0h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112819
ID:
305112819
11.

HeLa_5mM_RNaseR12h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112818
ID:
305112818
12.

HeLa_5mM_RNaseR2h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112817
ID:
305112817
13.

HeLa_5mM_RNaseR0h

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL24676
Series:
GSE167812
Download data: TXT
Sample
Accession:
GSM5112816
ID:
305112816
14.

1HR2_5mM_RNaseR2h

Organism:
synthetic construct
Source name:
In vitro transcription
Platform:
GPL17769
Series:
GSE167812
Download data: BEDPE
Sample
Accession:
GSM5590329
ID:
305590329
15.

1HR2_5mM_RNaseR0h

Organism:
synthetic construct
Source name:
In vitro transcription
Platform:
GPL17769
Series:
GSE167812
Download data: BEDPE
Sample
Accession:
GSM5590328
ID:
305590328
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Supplemental Content

db=gds|term=GSE167812[Accession]|query=1|qty=3|blobid=MCID_678f2b2ef521160690382900|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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