GSE38791[Accession] - GEO DataSets - NCBI

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Items: 11

Select item 2000387911.

Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [methylation27]

(Submitter supplied) Basal-like and luminal breast tumors have distinct clinical behavior and molecular profiles, yet the underlying mechanisms are poorly defined. To interrogate processes that determine these distinct phenotypes and their inheritance pattern, we generated somatic cell fusions and performed integrated genetic and epigenetic (DNA methylation and chromatin) profiling. We found that the basal-like trait is generally dominant and it is largely defined by epigenetic repression of luminal transcription factors. more...

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL8490
9 Samples

Download data: TXT

Series

Accession:: GSE38791

ID:: 200038791

PubMed Similar studies Analyze with GEO2R

Select item 1000084902.

Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)

(Submitter supplied) HumanMethylation27 DNA Analysis BeadChip allows researchers to interrogate 27,578 highly informative CpG sites per sample at single-nucleotide resolution. This 12-sample BeadChip features content derived from the well-annotated NCBI CCDS database (Genome Build 36) and is supplemented with more than 1,000 cancer-related genes described in published literature. Probe content has been enriched to deeply cover more than 150 well-established cancer genes known to show differential methylation patterns. more...

Organism:: Homo sapiens

348 Series
19058 Samples

Download data: CSV

Platform

Accession:: GPL8490

ID:: 100008490

Select item 3009496003.

SUM159PT_BT474_AVG_Beta

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949600

ID:: 300949600

Select item 3009495994.

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949599

ID:: 300949599

Select item 3009495985.

MDAMB231_AVG_Beta

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949598

ID:: 300949598

Select item 3009495976.

MCF7_H3K27me3_AVG_Beta

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949597

ID:: 300949597

Select item 3009495967.

T47D_H3K27me3_AVG_Beta

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949596

ID:: 300949596

Select item 3009495958.

MDAMB231_MCF7_AVG_Beta

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949595

ID:: 300949595

Select item 3009495949.

SUM159PT_MCF7_AVG_Beta

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949594

ID:: 300949594

Select item 30094959310.

SUM159PT_T47D_AVG_Beta

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949593

ID:: 300949593

Select item 30094959211.

SUM159PT_AVG_Beta

Organism:: Homo sapiens

Source name:: breast cancer cell lines

Platform:: GPL8490
Series:: GSE38548 GSE38791

Sample

Accession:: GSM949592

ID:: 300949592

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