GSE45600[Accession] - GEO DataSets

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Items: 18

Select item 2000456001.

A unique herpesviral transcriptional program in KSHV-infected lymphatic endothelial cells leads to mTORC1 activation and rapamycin sensitivity

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Human herpesvirus 8 type M; Human herpesvirus 8 strain rKSHV.219; Human gammaherpesvirus 8; Homo sapiens

Type:: Expression profiling by genome tiling array

Platforms:: GPL16894 GPL10083
15 Samples

Download data: TXT

Series

Accession:: GSE45600

ID:: 200045600

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000168942.

Agilent-029238 KSHV tiling microarray

(Submitter supplied) KSHV tiling microarray AMADID: 029238 Protocol: Standard Agilent printing methods. 60-mer tiling oligonucleotides. Offset = 20 nts from both strands of the KSHV genome (GQ994935.1). Platform contains both KSHV and human probes, all of which are used in the LOWESS normalization protocol. Platform contains standard Agilent controls probes, including probes that detect spike-in control transcripts.

Organism:: Homo sapiens; Human herpesvirus 8 strain rKSHV.219

3 Series
12 Samples

Download data: TXT

Platform

Accession:: GPL16894

ID:: 100016894

Select item 1000100833.

KSHV tiling microarray AMADID: 017577

(Submitter supplied) Probes based on KSHV (U75698.1) and Homo sapiens for select human transcripts. Protocol: Standard Agilent printing methods. 60-mer tiling oligonucleotides. Offset = 20nts from both strands of the KSHV genome (U75698.1). Platform contains both KSHV and human probes, all of which are used in the LOWESS normalization protocol Platform contains standard Agilent controls probes, including probes that detect spike-in control transcripts.

Organism:: Homo sapiens; Human herpesvirus 8 type M

4 Series
35 Samples

Download data

Platform

Accession:: GPL10083

ID:: 100010083

Select item 3011103374.

lytically induced rKSHV.219-infected inducible SLK

Organism:: Human herpesvirus 8 strain rKSHV.219; Homo sapiens; Human gammaherpesvirus 8

Source name:: lytically induced iSLK.219 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL10083
Series:: GSE45599 GSE45600

Download data: TXT

Sample

Accession:: GSM1110337

ID:: 301110337

Select item 3011103365.

latently rKSHV.219-infected inducible SLK

Organism:: Human herpesvirus 8 strain rKSHV.219; Homo sapiens; Human gammaherpesvirus 8

Source name:: latently infected iSLK.219 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL10083
Series:: GSE45599 GSE45600

Download data: TXT

Sample

Accession:: GSM1110336

ID:: 301110336

Select item 3011103356.

mock infected inducible SLK (uninfected)

Organism:: Human gammaherpesvirus 8; Homo sapiens

Source name:: mock infected iSLK (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL10083
Series:: GSE45599 GSE45600

Download data: TXT

Sample

Accession:: GSM1110335

ID:: 301110335

Select item 3011102087.

infected human aortic endothelial cell (HAEC)

Organism:: Homo sapiens; Human gammaherpesvirus 8; Human herpesvirus 8 strain rKSHV.219

Source name:: HAEC stably infected with rKSHV.219 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45591 GSE45600

Download data: TXT

Sample

Accession:: GSM1110208

ID:: 301110208

Select item 3011102078.

mock human aortic endothelial cell (HAEC)

Organism:: Human gammaherpesvirus 8; Homo sapiens

Source name:: mock infected HAEC (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45591 GSE45600

Download data: TXT

Sample

Accession:: GSM1110207

ID:: 301110207

Select item 3011102069.

infected human umbilical vein endothelial cell (HUVEC)

Organism:: Homo sapiens; Human gammaherpesvirus 8; Human herpesvirus 8 strain rKSHV.219

Source name:: HUVEC stably infected with rKSHV.219 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45591 GSE45600

Download data: TXT

Sample

Accession:: GSM1110206

ID:: 301110206

Select item 30111020510.

mock human umbilical vein endothelial cell (HUVEC)

Organism:: Homo sapiens; Human gammaherpesvirus 8

Source name:: mock infected HUVEC (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45591 GSE45600

Download data: TXT

Sample

Accession:: GSM1110205

ID:: 301110205

Select item 30111020411.

infected blood endothelial cell (BEC) replicate 2

Organism:: Homo sapiens; Human herpesvirus 8 strain rKSHV.219; Human gammaherpesvirus 8

Source name:: BEC stably infected with rKSHV.219 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45591 GSE45600

Download data: TXT

Sample

Accession:: GSM1110204

ID:: 301110204

Select item 30111020312.

mock blood endothelial cell (BEC) replicate 2

Organism:: Homo sapiens; Human gammaherpesvirus 8

Source name:: mock infected BEC (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45591 GSE45600

Download data: TXT

Sample

Accession:: GSM1110203

ID:: 301110203

Select item 30111020213.

infected lymphatic endothelial cell (LEC) replicate 2

Organism:: Human gammaherpesvirus 8; Human herpesvirus 8 strain rKSHV.219; Homo sapiens

Source name:: LEC stably infected with rKSHV.219 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45591 GSE45600

Download data: TXT

Sample

Accession:: GSM1110202

ID:: 301110202

Select item 30111020114.

mock lymphatic endothelial cell (LEC) replicate 2

Organism:: Human gammaherpesvirus 8; Homo sapiens

Source name:: mock infected LEC (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45591 GSE45600

Download data: TXT

Sample

Accession:: GSM1110201

ID:: 301110201

Select item 30111020015.

infected blood endothelial cell (BEC) replicate 1

Organism:: Human gammaherpesvirus 8; Homo sapiens; Human herpesvirus 8 strain rKSHV.219

Source name:: BEC stably infected with rKSHV.219 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45590 GSE45600

Download data: TXT

Sample

Accession:: GSM1110200

ID:: 301110200

Select item 30111019916.

mock blood endothelial cell (BEC) replicate 1

Organism:: Homo sapiens; Human gammaherpesvirus 8

Source name:: mock infected BEC (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45590 GSE45600

Download data: TXT

Sample

Accession:: GSM1110199

ID:: 301110199

Select item 30111019817.

infected lymphatic endothelial cell (LEC) replicate 1

Organism:: Human gammaherpesvirus 8; Homo sapiens; Human herpesvirus 8 strain rKSHV.219

Source name:: LEC stably infected with rKSHV.219 (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)

Platform:: GPL16894
Series:: GSE45590 GSE45600

Download data: TXT

Sample

Accession:: GSM1110198

ID:: 301110198

Select item 30111019718.

mock lymphatic endothelial cell (LEC) replicate 1

Organism:: Homo sapiens; Human gammaherpesvirus 8

Source name:: mock infected LEC (channel 1) Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic. (channel 2)